BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936504
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27470.1 | Symbols: | Protein of unknown function (DUF707) ... 1999 0.0
AT1G13000.1 | Symbols: | Protein of unknown function (DUF707) ... 244 1e-63
> AT3G27470.1 | Symbols: | Protein of unknown function (DUF707)
| chr3:10163049-10166907 FORWARD LENGTH=1803
Length=1803
Score = 1999 bits (1082), Expect = 0.0
Identities = 1178/1225 (96%), Gaps = 4/1225 (0%)
Strand=Plus/Plus
Query 1 TGG-AATATGAG-AGACCTAGTCAAATGATGAGGCTTCTATTAACATCCTTTTTCGGGGT 58
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 TGGAAATATGAGAAGACCTAGTCAAATGATGAGGCTTCTATTAACATCCTTTTTCGGTGT 302
Query 59 TATTGTTGGTTTCCTTATGGGTATTACTTTTCCAACCTTGACCTTAACTAAGATGAATCT 118
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 TATTGTTGGTTTCCTTATGGGTATTACTTTTCCAACCTTGACTTTAACTAAGATGAATCT 362
Query 119 TCCATCCACATTGTTTCCATCGATTGATCTCGCATACATTGAGGATAAATACTCGGACAT 178
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 363 TCCATCCACATTGTTTCCCTCGATTGATCTTGCATACATTGAGGATAAATACTCTGACAT 422
Query 179 ATCCAGACAAAGACTATTTGGTTCTTGGTCTTCGACAAAAGGCCTCAAACTTAAGAATGA 238
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 423 ATCAAGACAAAGACTATTTGGTTCTTGGTCTTCGACAAAAGGCCTCAAACTCAAGAATGA 482
Query 239 CATCCCTGAcccccccTATAACTATAGTGACACTAAGATATGGGTTCCTACTAACCCCCG 298
|||||||||||| || |||||||||| ||||||||||||||||||| | |||||||||||
Sbjct 483 CATCCCTGACCCTCCATATAACTATAATGACACTAAGATATGGGTTTCGACTAACCCCCG 542
Query 299 TGGTGCTGAGAGGCTACCCCCAGATATAGTCACGCCTGAATCAGATTTTTACCTCCGTCG 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGGTGCTGAGAGGCTACCACCAGATATAGTCACGCCTGAATCAGATTTTTACCTCCGTCG 602
Query 359 ACTGTGGGGTGACCCTAATGAGGATTTAACAATCAAGCAGCGGTATCTAGTAACATTTAC 418
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 603 ACTGTGGGGCGACCCTAATGAGGATTTAACAGTCAAGCAGCGGTATCTAGTAACATTTAC 662
Query 419 GGTTGGCTATGATCAGAGGAAAAATATAGACACTGTGTTGAAGAAGTTCTCAGATAACTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGTTGGCTATGATCAGAGGAAAAATATAGACACTGTGTTGAAGAAGTTCTCAGATAACTT 722
Query 479 CTCTATAATGCTGTTTCACTATGATGGCCGGGCCAGCGAATGGGAAGAGTTTGAATGGTC 538
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 723 CTCTATAATGCTGTTTCACTACGATGGCCGGGCAAGCGAATGGGAAGAGTTTGAATGGTC 782
Query 539 CAAGCGAGCCATTCATGTGAGCATTCGGAAACAAACAAAATGGTGGTACGCCAAGAGATT 598
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 783 CAAGCGAGCCATTCATGTGAGCATTCGGAAACAAACAAAATGGTGGTACGCTAAGCGATT 842
Query 599 TCTTCATCCTGACATAGTTGCCCCCTATGAATATATATTCATATGGGACGAGGATCTTGG 658
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 843 TCTTCATCCTGACATAGTTGCCCCCTATGAATATATCTTCATATGGGATGAGGATCTTGG 902
Query 659 TGTGGAACACTTTGATTCGGAAAAATATCTGGCCGTGGTGAAGAAACATGGTTTGGAAAT 718
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 903 CGTGGAACACTTTGATTCGGAAAAATATCTGGCGGTGGTGAAGAAGCATGGTTTGGAAAT 962
Query 719 CTCACAGCCTGGGTTAGAGCCATATGAAGGGCTCACATGGGAAATGACAAAGAAAAGAGA 778
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 963 CTCACAGCCTGGATTAGAGCCATATGAAGGGCTCACATGGGAGATGACCAAGAAAAGAGA 1022
Query 779 CGACACTGAAGTCCACAAGCATGCTGAGGAGAGGAATGGGTGGTGCACCGATCCCAACTT 838
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1023 CGACACTGAAGTCCACAAGCATGCTGAGGAAAGGAATGGGTGGTGCACTGATCCCAATTT 1082
Query 839 ACCCCCTTGTGCAGCATTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAAGCATGGCG 898
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1083 ACCCCCTTGTGCAGCGTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCG 1142
Query 899 CTGTGTGTGGCATATGATTCAGAACGATTTGGTTCATGGATGGGGTCTGGACTTTGCCGT 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1143 CTGTGTGTGGCATATGATTCAGAACGATTTGATTCATGGATGGGGTCTGGACTTTGCCGT 1202
Query 959 TCGGAAATGTGTTCAGAACGCACACGAGAAAATTGGAGTTGTTGATGCTCAATGGATTAT 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1203 TCGGAAATGTGTTCAGAACGCACACGAGAAAATTGGAGTTGTAGATGCTCAATGGATTAT 1262
Query 1019 TCATCAAGGTGTTCCATCACTCGGGAATCAAGGACAACCAGAGCGAGGGAAACAACCATG 1078
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 1263 ACATCAAGGTGTTCCATCATTAGGGAATCAAGGACAACCAGAGCAAGGGAAACAACCATG 1322
Query 1079 GGAAGGGGTGAGGGAAAGATGCAGGAGAGAGTGGACAATGTTTCAAGACAGATTGGATGA 1138
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GGAAGGGGTGAGAGAACGATGCAGGAGAGAGTGGACAATGTTTCAAGACAGATTGGATGA 1382
Query 1139 TGCTGAAAAAGCTTATTTTGAAGCATCTGCTCACAACAATGCTTCTTCACGGCCTCACGG 1198
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1383 TGCTGAAAAAGCTTATTTTGAAGCATCTGCTCACAAGAATGCTTCTTCACGGCCTCACGG 1442
Query 1199 GTAATAAGTAAA-ATAACAGTCTCT 1222
|||||||| ||| ||| |||||||
Sbjct 1443 GTAATAAGGAAACATAT-AGTCTCT 1466
> AT1G13000.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:4436105-4439464 REVERSE LENGTH=1901
Length=1901
Score = 244 bits (132), Expect = 1e-63
Identities = 402/528 (76%), Gaps = 36/528 (7%)
Strand=Plus/Plus
Query 516 GAATGGGAAGAGTTTGAATGGTCCAAGCGAGCCATTCATGTGAGCATTCGGAAA-CAAAC 574
||||||||||| || ||||||||||| || || || || |||||| | | ||| |||||
Sbjct 933 GAATGGGAAGAATTAGAATGGTCCAAACGCGCAATACACGTGAGCGTGC-CAAAGCAAAC 991
Query 575 AAAATGGTGGTACGCCAAGAGATTTCTTCATCCTGACATAGTTGCCCCCTATGAATATAT 634
||||||||||| || || || ||||| ||||||||||| || || || ||||| ||| |
Sbjct 992 CAAATGGTGGTATGCTAAAAGGTTTCTGCATCCTGACATTGTGGCACCTTATGACTATGT 1051
Query 635 ATTCATATGGGACGAGGATCTTGGTGTGGAACACTTTGAT-TCGGAA-A-AATATCTGGC 691
|||||| ||||| || || || || | ||| |||| ||| | ||| | | ||| ||
Sbjct 1052 ATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGT-AGAAGAGTACATCAGG- 1109
Query 692 CGTGGTGAAGAAACATGGTTTGGAAATCTCACAGCCTG-GGTTAGAGCCATATG-AAGGG 749
| | | |||||||| ||| | || || || ||||||| ||| ||| | || | || |
Sbjct 1110 C-TTATAAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTT-GAGTC-TAAGAAAAAG 1166
Query 750 CTCACATGGGAAATGACAAAGA-AAAGAGACGACA-CTGAAGTCCAC-AAGCATGCTG-A 805
|||||||||| || ||||||| ||| | || | | ||||| ||| ||| |||| | |
Sbjct 1167 ATCACATGGGAGATAACAAAGAGAAA-A-ACCAAAGGAGAAGTTCACAAAG-ATGC-GAA 1222
Query 806 GGAGAGGAA-TGGGT-GGTGCACCGATCCC-AACTTACC-CCCTTGTGCAGCATTTGTGG 861
||||| || ||| | |||| || ||| |||| || ||| |||||||| ||| | |
Sbjct 1223 GGAGA--AACCAGGTCGATGCAATGA-CCCTCACTTGCCTCCC-TGTGCAGCGTTTATAG 1278
Query 862 AGATTATGGCTCCTGTTTTCTCCCGCA-AAGCATGGCGCTGTGTGTGGCATATGATTCAG 920
||||||||||||| || ||||| | | | |||||||| || ||||||||||||||||||
Sbjct 1279 AGATTATGGCTCCAGTATTCTCAAG-AGATGCATGGCGTTGCGTGTGGCATATGATTCAG 1337
Query 921 AACGATTTGGTTCATGGATGGGGTCTGGACTTT-GC-CGTTCGGAAATGTGTTCAGAAC- 977
|||||||||||||| || |||||||| || ||| || | | || ||||| ||| || |
Sbjct 1338 AACGATTTGGTTCACGGTTGGGGTCTTGA-TTTCGCAC-TCCGTAAATGCGTTGAGC-CT 1394
Query 978 GCACACGAGAAAATTGGAGTTGTTGATGCTCAATGGATTATTCATCAA 1025
||||| ||||| || |||||||| ||| |||||||||| || ||||||
Sbjct 1395 GCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAA 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5