BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936504 Length=1222 Score E Sequences producing significant alignments: (Bits) Value AT3G27470.1 | Symbols: | Protein of unknown function (DUF707) ... 1999 0.0 AT1G13000.1 | Symbols: | Protein of unknown function (DUF707) ... 244 1e-63 > AT3G27470.1 | Symbols: | Protein of unknown function (DUF707) | chr3:10163049-10166907 FORWARD LENGTH=1803 Length=1803 Score = 1999 bits (1082), Expect = 0.0 Identities = 1178/1225 (96%), Gaps = 4/1225 (0%) Strand=Plus/Plus Query 1 TGG-AATATGAG-AGACCTAGTCAAATGATGAGGCTTCTATTAACATCCTTTTTCGGGGT 58 ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 243 TGGAAATATGAGAAGACCTAGTCAAATGATGAGGCTTCTATTAACATCCTTTTTCGGTGT 302 Query 59 TATTGTTGGTTTCCTTATGGGTATTACTTTTCCAACCTTGACCTTAACTAAGATGAATCT 118 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 303 TATTGTTGGTTTCCTTATGGGTATTACTTTTCCAACCTTGACTTTAACTAAGATGAATCT 362 Query 119 TCCATCCACATTGTTTCCATCGATTGATCTCGCATACATTGAGGATAAATACTCGGACAT 178 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 363 TCCATCCACATTGTTTCCCTCGATTGATCTTGCATACATTGAGGATAAATACTCTGACAT 422 Query 179 ATCCAGACAAAGACTATTTGGTTCTTGGTCTTCGACAAAAGGCCTCAAACTTAAGAATGA 238 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 423 ATCAAGACAAAGACTATTTGGTTCTTGGTCTTCGACAAAAGGCCTCAAACTCAAGAATGA 482 Query 239 CATCCCTGAcccccccTATAACTATAGTGACACTAAGATATGGGTTCCTACTAACCCCCG 298 |||||||||||| || |||||||||| ||||||||||||||||||| | ||||||||||| Sbjct 483 CATCCCTGACCCTCCATATAACTATAATGACACTAAGATATGGGTTTCGACTAACCCCCG 542 Query 299 TGGTGCTGAGAGGCTACCCCCAGATATAGTCACGCCTGAATCAGATTTTTACCTCCGTCG 358 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 543 TGGTGCTGAGAGGCTACCACCAGATATAGTCACGCCTGAATCAGATTTTTACCTCCGTCG 602 Query 359 ACTGTGGGGTGACCCTAATGAGGATTTAACAATCAAGCAGCGGTATCTAGTAACATTTAC 418 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 603 ACTGTGGGGCGACCCTAATGAGGATTTAACAGTCAAGCAGCGGTATCTAGTAACATTTAC 662 Query 419 GGTTGGCTATGATCAGAGGAAAAATATAGACACTGTGTTGAAGAAGTTCTCAGATAACTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 GGTTGGCTATGATCAGAGGAAAAATATAGACACTGTGTTGAAGAAGTTCTCAGATAACTT 722 Query 479 CTCTATAATGCTGTTTCACTATGATGGCCGGGCCAGCGAATGGGAAGAGTTTGAATGGTC 538 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 723 CTCTATAATGCTGTTTCACTACGATGGCCGGGCAAGCGAATGGGAAGAGTTTGAATGGTC 782 Query 539 CAAGCGAGCCATTCATGTGAGCATTCGGAAACAAACAAAATGGTGGTACGCCAAGAGATT 598 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 783 CAAGCGAGCCATTCATGTGAGCATTCGGAAACAAACAAAATGGTGGTACGCTAAGCGATT 842 Query 599 TCTTCATCCTGACATAGTTGCCCCCTATGAATATATATTCATATGGGACGAGGATCTTGG 658 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 843 TCTTCATCCTGACATAGTTGCCCCCTATGAATATATCTTCATATGGGATGAGGATCTTGG 902 Query 659 TGTGGAACACTTTGATTCGGAAAAATATCTGGCCGTGGTGAAGAAACATGGTTTGGAAAT 718 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 903 CGTGGAACACTTTGATTCGGAAAAATATCTGGCGGTGGTGAAGAAGCATGGTTTGGAAAT 962 Query 719 CTCACAGCCTGGGTTAGAGCCATATGAAGGGCTCACATGGGAAATGACAAAGAAAAGAGA 778 |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 963 CTCACAGCCTGGATTAGAGCCATATGAAGGGCTCACATGGGAGATGACCAAGAAAAGAGA 1022 Query 779 CGACACTGAAGTCCACAAGCATGCTGAGGAGAGGAATGGGTGGTGCACCGATCCCAACTT 838 |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct 1023 CGACACTGAAGTCCACAAGCATGCTGAGGAAAGGAATGGGTGGTGCACTGATCCCAATTT 1082 Query 839 ACCCCCTTGTGCAGCATTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAAGCATGGCG 898 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1083 ACCCCCTTGTGCAGCGTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCG 1142 Query 899 CTGTGTGTGGCATATGATTCAGAACGATTTGGTTCATGGATGGGGTCTGGACTTTGCCGT 958 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1143 CTGTGTGTGGCATATGATTCAGAACGATTTGATTCATGGATGGGGTCTGGACTTTGCCGT 1202 Query 959 TCGGAAATGTGTTCAGAACGCACACGAGAAAATTGGAGTTGTTGATGCTCAATGGATTAT 1018 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1203 TCGGAAATGTGTTCAGAACGCACACGAGAAAATTGGAGTTGTAGATGCTCAATGGATTAT 1262 Query 1019 TCATCAAGGTGTTCCATCACTCGGGAATCAAGGACAACCAGAGCGAGGGAAACAACCATG 1078 |||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct 1263 ACATCAAGGTGTTCCATCATTAGGGAATCAAGGACAACCAGAGCAAGGGAAACAACCATG 1322 Query 1079 GGAAGGGGTGAGGGAAAGATGCAGGAGAGAGTGGACAATGTTTCAAGACAGATTGGATGA 1138 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 GGAAGGGGTGAGAGAACGATGCAGGAGAGAGTGGACAATGTTTCAAGACAGATTGGATGA 1382 Query 1139 TGCTGAAAAAGCTTATTTTGAAGCATCTGCTCACAACAATGCTTCTTCACGGCCTCACGG 1198 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1383 TGCTGAAAAAGCTTATTTTGAAGCATCTGCTCACAAGAATGCTTCTTCACGGCCTCACGG 1442 Query 1199 GTAATAAGTAAA-ATAACAGTCTCT 1222 |||||||| ||| ||| ||||||| Sbjct 1443 GTAATAAGGAAACATAT-AGTCTCT 1466 > AT1G13000.1 | Symbols: | Protein of unknown function (DUF707) | chr1:4436105-4439464 REVERSE LENGTH=1901 Length=1901 Score = 244 bits (132), Expect = 1e-63 Identities = 402/528 (76%), Gaps = 36/528 (7%) Strand=Plus/Plus Query 516 GAATGGGAAGAGTTTGAATGGTCCAAGCGAGCCATTCATGTGAGCATTCGGAAA-CAAAC 574 ||||||||||| || ||||||||||| || || || || |||||| | | ||| ||||| Sbjct 933 GAATGGGAAGAATTAGAATGGTCCAAACGCGCAATACACGTGAGCGTGC-CAAAGCAAAC 991 Query 575 AAAATGGTGGTACGCCAAGAGATTTCTTCATCCTGACATAGTTGCCCCCTATGAATATAT 634 ||||||||||| || || || ||||| ||||||||||| || || || ||||| ||| | Sbjct 992 CAAATGGTGGTATGCTAAAAGGTTTCTGCATCCTGACATTGTGGCACCTTATGACTATGT 1051 Query 635 ATTCATATGGGACGAGGATCTTGGTGTGGAACACTTTGAT-TCGGAA-A-AATATCTGGC 691 |||||| ||||| || || || || | ||| |||| ||| | ||| | | ||| || Sbjct 1052 ATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGT-AGAAGAGTACATCAGG- 1109 Query 692 CGTGGTGAAGAAACATGGTTTGGAAATCTCACAGCCTG-GGTTAGAGCCATATG-AAGGG 749 | | | |||||||| ||| | || || || ||||||| ||| ||| | || | || | Sbjct 1110 C-TTATAAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTT-GAGTC-TAAGAAAAAG 1166 Query 750 CTCACATGGGAAATGACAAAGA-AAAGAGACGACA-CTGAAGTCCAC-AAGCATGCTG-A 805 |||||||||| || ||||||| ||| | || | | ||||| ||| ||| |||| | | Sbjct 1167 ATCACATGGGAGATAACAAAGAGAAA-A-ACCAAAGGAGAAGTTCACAAAG-ATGC-GAA 1222 Query 806 GGAGAGGAA-TGGGT-GGTGCACCGATCCC-AACTTACC-CCCTTGTGCAGCATTTGTGG 861 ||||| || ||| | |||| || ||| |||| || ||| |||||||| ||| | | Sbjct 1223 GGAGA--AACCAGGTCGATGCAATGA-CCCTCACTTGCCTCCC-TGTGCAGCGTTTATAG 1278 Query 862 AGATTATGGCTCCTGTTTTCTCCCGCA-AAGCATGGCGCTGTGTGTGGCATATGATTCAG 920 ||||||||||||| || ||||| | | | |||||||| || |||||||||||||||||| Sbjct 1279 AGATTATGGCTCCAGTATTCTCAAG-AGATGCATGGCGTTGCGTGTGGCATATGATTCAG 1337 Query 921 AACGATTTGGTTCATGGATGGGGTCTGGACTTT-GC-CGTTCGGAAATGTGTTCAGAAC- 977 |||||||||||||| || |||||||| || ||| || | | || ||||| ||| || | Sbjct 1338 AACGATTTGGTTCACGGTTGGGGTCTTGA-TTTCGCAC-TCCGTAAATGCGTTGAGC-CT 1394 Query 978 GCACACGAGAAAATTGGAGTTGTTGATGCTCAATGGATTATTCATCAA 1025 ||||| ||||| || |||||||| ||| |||||||||| || |||||| Sbjct 1395 GCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAA 1442 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60039851820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5