BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936523
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27580.1 | Symbols: ATPK7, D6PKL3 | Protein kinase superfami... 2612 0.0
> AT3G27580.1 | Symbols: ATPK7, D6PKL3 | Protein kinase superfamily
protein | chr3:10217417-10219976 REVERSE LENGTH=2483
Length=2483
Score = 2612 bits (1414), Expect = 0.0
Identities = 1675/1796 (93%), Gaps = 37/1796 (2%)
Strand=Plus/Plus
Query 1 GAATTGTGTCGAACACCTTCAATGGATTCTTCTTCATCAGTCGTTTACGTTGGTTCATCA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GAATTTTGTCGAACACCTTCAATGGATTCTTCTTCATCAGTCGTTTACGTTGGTTCATCA 531
Query 61 TCCAAACCCAGAAACCTTCCAGCCAAATCCAAAGGTTCGATTACATCTTTTTCAATCGAT 120
|||||| |||||||| ||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 532 TCCAAATCCAGAAACTTTCAATCTAAATCCAAAGGTTCGATTACATCTTTCTCAATCGAT 591
Query 121 TCAAGAAGCACCAAGAAATCAGAACGGCCATTGAAGAAGGCGTTAATACCAGAACCAGAA 180
|||||| ||||||||||||| | | |||||| | ||||| ||||||||||||
Sbjct 592 TCAAGAGGCACCAAGAAATC---A-----A-TGAAGACGTTATTAATCCCAGAACCAGAA 642
Query 181 ACAACTTCCCCTGAAGTTATAGAAAGTTCTGAATCCTCTGTTTCAGCTGAATCCGAAACA 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 643 CCAACTTCCCCTGAAGTTATAGAAAGTTCTGTGTCCTCTGTTTCAGCTGAATCCGAGACA 702
Query 241 CCAATTTCGATTATACGTAAGAAGAAACAATCAGAGCCAAGATATTACCCTAGCCCAACG 300
||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 703 CCAATTTCGATTATACGTAAGAAGAAACAATCAGAGCCAAGGTTTTACTCTAGCCCAACC 762
Query 301 AACACGTTTTACACAGCGCCACTCTACACGGAAGCAAAACAGAGCTTTACCAACACAGAA 360
|||||||||| | | ||| ||||||||||| ||||||||||||||||||
Sbjct 763 AACACGTTTT----------A--C-ACA--GAAGCAAAACAAAGCTTTACCAACACAGAA 807
Query 361 GTCAGTGAATGTGCAAGCATATGCACTATCGGTATAGGCGGTATCGATTTGGAGAAGAAT 420
|||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||
Sbjct 808 TTCAGTGAATGTGCAAGCATAAGCACTATTGGTATAGGTGGTATTGATTTGGAGAAGAAT 867
Query 421 GGTGTAATGATATACAGAGGAAGTACAGGGAGTGATGTTAGTGACGAGAGTAGCTTGAGT 480
||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 868 GGTGTAATGATATACAGAGGAAGTATAGGGAGTGATGTTAGTGATGAGAGTAGCTCAAGT 927
Query 481 AGTATGAGTAATGCAGCTTATAAGCCACATAGAGCTAATAACGATAAGCGTTGGGTTGCG 540
|| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 928 GGTCTGAGTAATGCAGCTTACAAGCCACATAGAGATAATAACGATAAGCGTTGGGTTGCG 987
Query 541 ATACAGGAGGTTCGGTCTCGGGTTGGTTCGTCGCTTGAGGCTAAAGATTTCAAGCTGATG 600
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ATTCAGGAGGTTCGTTCTCGGGTTGGTTCGTCGCTTGAGGCTAAAGATTTCAAGCTGATT 1047
Query 601 AA-ACGGCTT-GGAGGAGGTGACATTGGGAATGTTTACTTAGCTGAGTTGATTGGAACTG 658
|| | | || ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1048 AAGA-AG-TTAGGAGGAGGTGATATTGGTAATGTTTACTTAGCTGAGTTGATTGGAACTG 1105
Query 659 GAGTGAGTTTTGCTGTGAAAGTTATGGAGAAAGCAGCTATTGCAGCGAGGAAGAAGCTTG 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1106 GAGTGAGTTTTGCTGTGAAAGTTATGGAGAAAGCTGCTATTGCAGCGAGGAAGAAGCTTG 1165
Query 719 TTAGAGCTCAGACTGAGAAAGAGATACTTCAATCGTTAGATCATCCGTTCTTGCCTACGC 778
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1166 TTAGAGCTCAGACTGAGAAAGAGATACTTCAATCGTTAGATCATCCTTTCTTGCCTACGC 1225
Query 779 TTTATTCACATTTCGAAACAGAGAAT-CATTCTTGTTTGGTTATGGAGTTTTGTCCTGGT 837
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1226 TTTACTCACATTTCGAAACAGAG-ATGAATTCTTGTTTGGTTATGGAGTTTTGTCCTGGT 1284
Query 838 GGTGATTTACATTCTCTCCGGCAAAAACAGCGTGGAAAGTACTTCCCTGAGCAGGCTGCT 897
||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1285 GGTGATTTACATTCTCTTAGACAAAAACAGCGTGGAAAGTACTTCCCTGAGCAAGCTGCT 1344
Query 898 AGGTTTTATGTTGCTGAAGTGCTTCTTGCGATGGAATATCTACACATGCTTGGGATCATT 957
|| ||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 1345 AGATTTTATGTTGCTGAAGTTCTTCTTGCTATGGAGTATCTACATATGCTTGGGATCATA 1404
Query 958 TACAGAGACCTTAAGCCTGAGAATGTTTTAGTTCGTGAAGATGGACATATAATGCTATCC 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 TACAGAGACCTTAAGCCTGAGAATGTTTTAGTTCGTGAAGATGGACATATAATGCTATCT 1464
Query 1018 GATTTCGATCTCTCCCTGAGATGTGCAGTCTCTCCAACGTTGGTTCGTTTCGCAGCAATC 1077
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1465 GATTTCGACCTCTCTTTGAGATGTGCAGTCTCTCCAACGTTGGTTCGGTTCGCAGCAATC 1524
Query 1078 ACGCTCGAGTCCAAAAGCTCAAGCTACTGTATCCAGCCAACATGTGTAGACCAATCGAGC 1137
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1525 ACGCTTGAGTCCAAAAGCTCAAGCTACTGTATCCAACCAACATGTGTAGACCAATCGAGC 1584
Query 1138 TGCATTGTTCAACCTGACTGCATCCAGCCAGTGTGTTTCACTCCTCGGTTCTTGTCTAAA 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 TGCATTGTTCAGCCTGACTGCATCCAGCCAGTGTGTTTCACTCCTCGGTTCTTGTCTAAA 1644
Query 1198 GGAAAGCACAAGAAGAAGTCGAACGATATGAGCCGCCAAATCAGACCGCTCCCCGAGCTT 1257
|||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1645 GGAAAGCACAGGAAGAAGTCGAACGATATGAGCCGCCAAATCAGACCGCTTCCTGAGCTG 1704
Query 1258 ATCGCTGAACCGACTAGCGCAAGGTCAATGTCGTTTGTCGGCACACACGAGTACTTAGCA 1317
|| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1705 ATAGCTGAACCGACTAGCGCAAGGTCAATGTCGTTTGTTGGTACACACGAGTACCTAGCA 1764
Query 1318 CCAGAGATTATCAAAGGAGAAGGCCACGGCAGCGCGGTTGACTGGTGGACATTCGGGATT 1377
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1765 CCAGAGATTATCAAAGGAGAAGGTCATGGAAGCGCGGTTGACTGGTGGACATTCGGGATA 1824
Query 1378 TTCCTCTATGAGCTTCTATTCGGGATAACACCGTTTAGAGGAGGCGATAACAGAGCGACA 1437
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1825 TTCCTCTATGAGCTTCTATTTGGGATAACACCGTTTAGAGGAGGCGATAACAGAGCGACA 1884
Query 1438 CTCTTTAACGTAGTTGGACAGCCATTGCGGTTTCCCGAGCACCCAAATGTGAGCTTTGCA 1497
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1885 CTCTTTAACGTAGTTGGACAGCCATTGCGGTTTCCCGAGCATCCAAATGTGAGCTTTGCA 1944
Query 1498 GCTAGAGACTTGATCAGAGGATTGCTAGTGAAAGAGCCTCAGCACCGGTTGGCTTATAGA 1557
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1945 GCTAGAGATTTGATCAGAGGATTGCTAGTGAAAGAGCCTCAGCATCGGTTGGCTTATAGA 2004
Query 1558 AGAGGAGCTACTGAGATTAAGCAACATCCGTTTTTCCAAAGTGTGAATTGGGCTTTGATC 1617
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2005 AGAGGAGCTACTGAGATTAAGCAGCATCCGTTTTTCCAAAGTGTGAATTGGGCTTTGATC 2064
Query 1618 AGATGCACCAGTCCACCACAGATCCCTCAACCGGTTAAACCAATGGATCAAGCTC-CTAG 1676
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 2065 AGATGCACCAGTCCACCACAGATTCCTCAACCGGTTAAACCAATGGATCAAGCTCAC-AG 2123
Query 1677 TCTTCGTCATGGTCTTAGTCAAGGACATGGACATGGTG-TTCATGATAATAAGCCTCCTA 1735
| ||||||||||| ||||||||||||||||||||| || || ||||||| ||||||||
Sbjct 2124 TGTTCGTCATGGTTTTAGTCAAGGACATGGACATGTTGGTT-ATGATAA---GCCTCCTA 2179
Query 1736 CTGTGGATGTGAAGCCTTCTGGTAATTATTTGGAAATTGATTTCTTCTGATTTGTG 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2180 CTGTGGATGTGAAGCCTTCTGGTAATTATTTGGAAATTGATTTCTTCTGATTTGTG 2235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89306769555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5