BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936528
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27640.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2368 0.0
> AT3G27640.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:10232248-10235621 FORWARD LENGTH=1821
Length=1821
Score = 2368 bits (1282), Expect = 0.0
Identities = 1548/1669 (93%), Gaps = 47/1669 (3%)
Strand=Plus/Plus
Query 1 AATTAATTTTCCCGCGTCAAATGAGAAACCACACCGCCC-AAAAATCCAGTAT----CC- 54
|||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct 40 AATTAATTTTCCCGCGTCAAATGAGAGACCACACCGCCCAAAAAATCCAGTATCCCGCCG 99
Query 55 ----C--AGACTCTCCGATGGAATCCTCCAGATCTAGATCCGTCTTCGCCAACATCGGAC 108
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 100 GATTCAGAGACTCTCCGATGGAATCCTCCAGATCTAGATCCGTCTTCGTCAACATCGGAC 159
Query 109 TCAGAGAGCTCAACGGATTTCGAGTACGGAAGCGACCGTTCTTCGCAGATTCCGAGCTCA 168
||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 160 TCAGAGAACTCAACGGATTTCGAGTACGGAAGAGACCGTTCTTCGCAGACTCCGAGCTGA 219
Query 169 TTTGCAGAGAAATCGCCGGCGTGGCGGTGGAACACGACGGGATTCGAACCCCGCCGTTGG 228
|||||||||||||||||||||| || |||||||||||||||||| | || ||||||||||
Sbjct 220 TTTGCAGAGAAATCGCCGGCGTAGCCGTGGAACACGACGGGATTTGGACTCCGCCGTTGG 279
Query 229 CCGTTTCCTTTTGTAAGACTAGCCGGAATTCTCAATTATTCGCGGTATCTGATGAAGACG 288
| ||||| ||||||||||||||| ||||||| ||||| ||||| || |||||||||||||
Sbjct 280 CTGTTTCGTTTTGTAAGACTAGCAGGAATTCGCAATTGTTCGCCGTCTCTGATGAAGACG 339
Query 289 GCCATGTGAGCTTGTTTAA---TTCCAGTAAGAAGTTTGCCTCTTCTGCAACTCACCAAG 345
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 340 GCCATGTGAGCTTGTTTAATTCTTCCAGTAAGAAGTTTGCTTCTTCTGCAACTCACCAAG 399
Query 346 AGAATACAAAGAATGCTAGATTTCGTGATTGGATTGCTCATTATAACGCGATATTCGACA 405
|||||||| |||| |||||||||||||| ||||||||||||||||| || || || ||||
Sbjct 400 AGAATACAGAGAAAGCTAGATTTCGTGACTGGATTGCTCATTATAATGCTATCTTTGACA 459
Query 406 TTTCTTGGATCAAGAGAGATAGTTGTCTTCTAACTGCTTCTGGTGATCAAACTATTAAAG 465
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 460 TTTCTTGGATCAAGGGAGATAGTTGTCTTCTGACTGCTTCTGGTGATCAAACTATTAAAG 519
Query 466 TGTGGGATGTAGAGGAGAATAAGTGTACTGGAGTTCTTATAGGACACACAGGAACTGTAA 525
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 520 TATGGGATGTAGAGGAGAATAAGTGTACTGGAGTTCTTATTGGACATACAGGAACTGTAA 579
Query 526 AATCAATGTGTTCACATCCAACGAATTCTGATCTTCTTGTATCTGGTTCGAGAGATGGAT 585
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 580 AATCTATGTGTTCACATCCAACGAATTCTGATCTTCTTGTATCTGGTTCAAGAGATGGAT 639
Query 586 GTTTTGCTTTGTGGGACTTAAGATGTAAAAGTAGCTCTCACAAAGAGGAATTTTGTATCA 645
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 640 GTTTTGCGTTGTGGGATTTAAGATGTAAAAGTAGCTCTCATAAAGAGGAATTTTGTATCA 699
Query 646 ACTCCACTGGCATGGTTAAAGGAGCTCATCTATCCCCTCTTTCAAAACGAATCAGACGTC 705
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 700 ACTCTACTGGCATGGTTAAAGGAGCTCATCTATCTCCACTTTCAAAACGAATCAGACGTC 759
Query 706 GCAAGGCTGCTTCATCAAGCATTACCTCTGTGCTTTATCTCAAGGACGAGATCACAATTG 765
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 760 GCAAGGCTGCTTCGTCAAGCATTACCTCTGTGCTTTATGTCAAGGACGAGATCACAATTG 819
Query 766 CTACTGCTGGAGCTCCAGATAGTGCCTTGAAATTTTGGGATACAAGGAAGCTGAAAGCTC 825
||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 820 CTACTGCTGGAGCACCTGATAGTGCCTTGAAATTTTGGGATATAAGAAAGCTGAAAGCTC 879
Query 826 CTTTTGCTCAAGCTTCTCCCCAGTCAGACCCAACAAACACAAAGGAAAAGAGATCACATG 885
||||||||||||| ||||| || |||||||||||||| || |||||||||||||||||||
Sbjct 880 CTTTTGCTCAAGCCTCTCCACAATCAGACCCAACAAATACTAAGGAAAAGAGATCACATG 939
Query 886 GTATAGTATCCTTGTCCCAGGACTCAAGTGGAACCTTTCTCACAGCATCATGCAAGGACA 945
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 940 GTATAGTTTCCTTGTCCCAGGACTCAAGTGGAACCTATCTCACAGCATCATGCAAGGACA 999
Query 946 ATAGAATCTATCTATACAACACCCTGCGGCTTGACAAAGGACATGTACAATCTTTCTCTA 1005
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1000 ATAGAATCTATCTATACAACACGCTGCGGCTTGACAAAGGACCTGTACAATCTTTCTCTG 1059
Query 1006 GCTGCCGAATAGATTCTTTTTTCGTAAGGACAATGATTAGTCCTGATGGTGAATATGTCT 1065
||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1060 GCTGCCGGATAGATTCTTTCTTCGTAAGGACGATGATTAGTCCTGATGGTGAATATGTTT 1119
Query 1066 TGAGCGGTTCAAGCGATGGAAACGCTTACATATGGCAGGTCAATAAACCTCAAGTAGATC 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TGAGCGGTTCAAGCGATGGAAACGCTTACATATGGCAGGTCAATAAACCTCAAGTAGATC 1179
Query 1126 CTATAATCTTGAAAGGCCATGACTTTGAAGTTACTGCAGTAGATTGGTCTCCATCGGAGA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1180 CTATAATCTTGAAAGGCCATGACTTTGAAGTTACTGCAGTAGATTGGTCTCCATCAGAGA 1239
Query 1186 TTGGGAAAGTTGCAACGGCTTCAGATGATTTCACGGTACGACTATGGAACATAGAGAACA 1245
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TTGGGAAAGTTGCAACAGCTTCAGATGATTTCACGGTACGACTATGGAACATAGAGAACA 1299
Query 1246 ACCGCTGCACAAACACAAACGCAACAGCGTCTGTGTCTAGAGTCAAACGCAGAGTAACCG 1305
|| || |||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1300 ACATATGTACAAACGCAAACGCAACAGCGTCTGTGTCCAGAGTTAAACGCAGAGTAACCG 1359
Query 1306 CATTTTCAAACACTGAAGCCAAAGAAAGACTAGAGATGAACAGAGAAACTGAGAGTCCCC 1365
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1360 CATTGTCAAACACTGAAGCCAAAGAAAGACTTGAGATGAACAGAGAAACTGAGAGTCCCC 1419
Query 1366 AAAAGCATTCATCATTAT--T-AGATGATGATTATATTAATAATGATCAGTCAACGCCTA 1422
|||||||||||||||||| | |||||||||||||| | |||||||||||||| |||||
Sbjct 1420 AAAAGCATTCATCATTATCATCAGATGATGATTATA--A-TAATGATCAGTCAATGCCTA 1476
Query 1423 TCATTAGAACTCCAGAGTCTCAGAAGAA-AAcatcatcatcatcatcatcatcattgtca 1481
|||||||||||||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 1477 TCATTAGAACTCCAGAGTCTCAGAAGAAGAA-A--A-CATCATCATCATCATCATTGTCA 1532
Query 1482 tcattatcatcattatcatcattatcatcatcaGAAGAAGATATAATATGCGAGAGAACA 1541
|||||||||||| |||||||||||||||||||||||||||
Sbjct 1533 TCATTATCATCA---------------------GAAGAAGATATAATATGCGAGAGAACA 1571
Query 1542 CCAGAAACCACATTCAACAGTCCTTCCTCTGTACTAAACCCTCCTTCCTCAGTCAAAAGG 1601
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1572 CCAGAAACCACATTCAACAGTCCATCCTCTGTACTAAACCCTCCTTCCTCAGTCAAAAGG 1631
Query 1602 CGAACCATTAGAGATTATTTTCTTGTCACTCCCTAAACTCTAATCTCTT 1650
||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1632 CGAACCATTAGAGATTATTTTCTCGTCACTCCCTAAACACTAATCTCTT 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5