BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936534
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II... 1240 0.0
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light ha... 894 0.0
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light ha... 865 0.0
> AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem
II light harvesting complex gene 2.3 | chr3:10255947-10257011
FORWARD LENGTH=946
Length=946
Score = 1240 bits (671), Expect = 0.0
Identities = 778/831 (94%), Gaps = 1/831 (0%)
Strand=Plus/Plus
Query 17 aaG-AATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGC 75
||| |||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 51 AAGCAATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGC 110
Query 76 CATCCAACGATCTCATTCGTAAGGTCGGAGCCTCCAATGGTGGCGGCCGCGTCGTCATGC 135
|||||||||||||| | || || |||||||||||||||| || |||||| || ||||||
Sbjct 111 CATCCAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGC 170
Query 136 GACGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACC 195
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACC 230
Query 196 TAGGACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACG 255
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TAGGACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACG 290
Query 256 GCTGGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCG 315
| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 291 GTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCG 350
Query 316 AAGTAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTC 375
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 351 AAGTGATCCACAGTAGATGGGCAATGTTGGGAGCTTTAGGCTGCACCTTCCCTGAAATTC 410
Query 376 TCTCCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCT 435
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 411 TCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCT 470
Query 436 TCTCAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATAT 495
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATAT 530
Query 496 TAGCCATTTGGGCTTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAG 555
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAG 590
Query 556 GTGGGCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGCGGAGCGTTTGACCCGTTGA 615
|||| |||||||| ||||| |||||||| |||||||| ||||| || || ||||||||||
Sbjct 591 GTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGA 650
Query 616 ACTTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTC 675
|||||||||||||||||||||| || || || ||||| ||||||||||| ||||||||||
Sbjct 651 ACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTC 710
Query 676 GTCTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTC 735
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 711 GTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTC 770
Query 736 CGATAGAGAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAACGCTTGGGCTTACG 795
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 771 CGATCGAAAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAATGCTTGGGCTTACG 830
Query 796 CCACCAACTTTGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAA 846
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CCACCAACTTCGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAA 881
> AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823240-1824425 REVERSE LENGTH=1101
Length=1101
Score = 894 bits (484), Expect = 0.0
Identities = 698/802 (87%), Gaps = 11/802 (1%)
Strand=Plus/Plus
Query 20 AATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGCCATC 79
||||||||| ||||| ||||| || ||||| ||||||||||||||| | || ||||| ||
Sbjct 94 AATGGCAACATCAGCTATCCAGCAATCCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTC 153
Query 80 CAACGATCTCATTCGTAAGGTCGGAGCCTCCAATGGTGGCGGCCGCGTCG-TCATGCGAC 138
|||||| ||| | || ||||| || | ||| ||||| ||||| || | |||||| |
Sbjct 154 CAACGAACTCCTCCGCAAGGTTGGTGTATCC---GGTGGTGGCCGTGT-GACCATGCGTC 209
Query 139 GTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAG 198
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 210 GTACCGTCAAGTCTACTCCTCAAAGCATCTGGTACGGACCAGACCGTCCCAAGTACTTAG 269
Query 199 GACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGCT 258
||||||||||||| || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 270 GACCATTCTCGGAGAATACACCGTCCTACCTAACCGGAGAATACCCCGGAGACTACGGCT 329
Query 259 GGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCGAAG 318
|||||||||| || ||||| ||||| || || |||||||| |||||||||||||| ||||
Sbjct 330 GGGACACCGCTGGACTCTCGGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAAG 389
Query 319 TAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTCTCT 378
|||||||||| |||||||| |||||||| ||| | || ||||| ||||| || |||||||
Sbjct 390 TAATCCACAGCAGATGGGCTATGTTGGGTGCTCTCGGATGCACATTCCCTGAGATTCTCT 449
Query 379 CCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCTTCT 438
|||| ||||| || |||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 450 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCAGGTTCTCAGATTTTCT 509
Query 439 CAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 498
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 510 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 569
Query 499 CCATTTGGGCTTGT-CAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 557
|||| |||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 570 CCATCTGGGCT-GTTCAAGTTGTGCTCATGGGGTTCATTGAAGGCTACAGAATCGGAGGT 628
Query 558 GGGCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGCGGAGCGTTTGACCCGTTGAAC 617
|| ||||| || ||||| |||||||| |||||||| || || ||||| ||||| ||||||
Sbjct 629 GGACCTCTCGGAGAAGGGCTTGACCCGCTTTACCCCGGAGGTGCGTTCGACCCATTGAAC 688
Query 618 TTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTCGT 677
|| || ||||||||||| || ||||| || |||||||||||||||| || |||||||||
Sbjct 689 TTGGCTGAGGATCCAGAGGCTTTCTCTGAGCTGAAGGTGAAGGAGCTTAAGAACGGTCGT 748
Query 678 CTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTCCG 737
||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 749 CTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTTACTGGTAAAGGTCCC 808
Query 738 ATAGAGAATCTG-TTCGATCACATTG-CAGACCCTGTGGCTAACAACGCTTGGGCTTACG 795
|| ||||| || || ||||| ||| | || ||||||||||||||||| ||| ||||||
Sbjct 809 ATTGAGAA-CTTATTTGATCAT-TTGGCTGATCCTGTGGCTAACAACGCCTGGTCTTACG 866
Query 796 CCACCAACTTTGTCCCCGGAAA 817
| || |||||||||||||||||
Sbjct 867 CTACTAACTTTGTCCCCGGAAA 888
> AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799234-1800392 REVERSE LENGTH=1063
Length=1063
Score = 865 bits (468), Expect = 0.0
Identities = 694/803 (86%), Gaps = 15/803 (2%)
Strand=Plus/Plus
Query 21 ATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGCCATCC 80
||||| || ||||| |||||||| ||||| ||||||||||||||| | || ||||| |||
Sbjct 64 ATGGCCACATCAGCTATCCAACAATCCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTCC 123
Query 81 AACGATCTCATTCGTAAGGTCGGAGCCTCCAAT-GGTGGCGGCCGCGTCG-TCATGCGAC 138
| ||| ||||| | ||||| || || | | | || || ||||| || | |||||| |
Sbjct 124 AGCGACCTCATCCAAAAGGT-GG-GCGT-C-TTGGGCGGTGGCCGTGT-GACCATGCGTC 178
Query 139 GTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAG 198
||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||| | |
Sbjct 179 GTACCGTCAAGTCTACTCCCCAAAGCATCTGGTATGGACCAGACCGTCCCAAGTACTTGG 238
Query 199 GACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGCT 258
||||||||||||| |||||||| || ||| |||| ||||||||||| |||||||||||||
Sbjct 239 GACCATTCTCGGAGAACACACCGTCTTACTTAACTGGAGAATACCCCGGAGACTACGGCT 298
Query 259 GGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCGAAG 318
|||||||||| || ||||| ||||| || || |||||||| |||||||||||||| ||||
Sbjct 299 GGGACACCGCTGGACTCTCGGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAAG 358
Query 319 TAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTCTCT 378
|||||||||| |||||||| |||||||| ||| | || ||||| ||||| ||||||||||
Sbjct 359 TAATCCACAGCAGATGGGCTATGTTGGGTGCTCTCGGATGCACATTCCCTGAAATTCTCT 418
Query 379 CCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCTTCT 438
|||| ||||| || |||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 419 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCAGGCTCTCAGATTTTCT 478
Query 439 CAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 498
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 538
Query 499 CCATTTGGGCTTGT-CAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 557
|||| |||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 539 CCATCTGGGCT-GTTCAAGTTGTGCTCATGGGGTTCATTGAAGGCTACAGAATCGGAGGT 597
Query 558 GGGCCTCTTGGTGAAGGACTTGACCCACTTTA-CCCTGGCGGAGCGTTTGACCCGTTGAA 616
|| || || || |||||||||||||| ||||| ||| || || ||||| ||||| |||||
Sbjct 598 GGACCACTCGGAGAAGGACTTGACCCGCTTTATCCC-GGAGGTGCGTTCGACCCATTGAA 656
Query 617 CTTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTCG 676
||| || ||||||||||| || ||||| || ||||||||||||||||||| ||||||||
Sbjct 657 CTTGGCTGAGGATCCAGAGGCTTTCTCTGAGCTGAAGGTGAAGGAGCTCAAGAACGGTCG 716
Query 677 TCTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTCC 736
|||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 717 TCTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTTACTGGTAAAGGTCC 776
Query 737 GATAGAGAATCTG-TTCGATCACATTG-CAGACCCTGTGGCTAACAACGCTTGGGCTTAC 794
|| ||||| || || ||||| ||| | || ||||||||||||||||| ||| |||||
Sbjct 777 CATTGAGAA-CTTATTTGATCAT-TTGGCTGATCCTGTGGCTAACAACGCCTGGTCTTAC 834
Query 795 GCCACCAACTTTGTCCCCGGAAA 817
|| || |||||||||||||||||
Sbjct 835 GCTACTAACTTTGTCCCCGGAAA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5