BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936535

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27680.1 | Symbols:  | Plant self-incompatibility protein S1...   472    2e-132


> AT3G27680.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:10254886-10255290 REVERSE LENGTH=405
Length=405

 Score =  472 bits (255),  Expect = 2e-132
 Identities = 359/409 (88%), Gaps = 8/409 (2%)
 Strand=Plus/Plus

Query  21   ATGAAAAACCTTTCAGTATTTCTATTTGTTTTTAGCATTTACATTCTTGGCCATGTATCC  80
            ||||||| ||||||||| ||||||||||||||||| ||||||||| |||| |||||||||
Sbjct  1    ATGAAAATCCTTTCAGTTTTTCTATTTGTTTTTAGTATTTACATTTTTGGTCATGTATCC  60

Query  81   GGCACTGGAATCACAATCACGAACGAACTCCAAT-TCA-AGAAACTCCTCTGGATGAGGT  138
            ||||| ||||| | ||||  |||||||||| ||| ||| | |||||  | ||||||||||
Sbjct  61   GGCACCGGAATTAGAATCGTGAACGAACTCAAATCTCATAAAAACT--TATGGATGAGGT  118

Query  139  GTTATTCCAAAGATGACGTAATAGGTCCAAAAGTACTATCAATCGGACA-GCAATATGAA  197
            ||||||||||| |||| ||||||||||||||| || || || | ||| | | | || |  
Sbjct  119  GTTATTCCAAAAATGATGTAATAGGTCCAAAAATAATACCAGTGGGATATG-ATTACGTG  177

Query  198  AATTCTTTTCGTGCTAACATTTGGGGTACGACTCGTTTCATGTGTACATTGAAACAAGGA  257
            |||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  178  AATAGTTTTCGCGCTAACATTTGGGGTACGACTCGTTTCATGTGTACTTTGAAACAAAGA  237

Query  258  CCTAATTATAAACACTATCAAAATTTTACAGCATTTAAGCAATATACTGGTTATGATAAT  317
            || || |||| ||| |||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct  238  CCAAACTATAGACATTATCAAAATTTTACCGCATTTAAACAATATACTGCTTATGATAAT  297

Query  318  GGAGCCGATTGGGATTGGAGAGCCAGAGAAGATGGAATCTATTTAAAGAAAGAAGGTGGA  377
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  298  GGAGCTGATTGGGATTGGAGAGCGAGAGAAGATGGAATCTATTTAAAGAAAGAAGGTGGC  357

Query  378  ATAAGAAAA-TCGGTTGATATGCATAAAGTATATGATTGGATAAATTAA  425
             ||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct  358  TTAA-AAAAGTCGGTTGATATGAATAAAGTATATGATTGGATAAATTAA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21162722329


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5