BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936538
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily pr... 2170 0.0
AT3G27720.1 | Symbols: ARI4, ATARI4 | IBR domain containing pro... 1371 0.0
> AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily
protein | chr3:10269206-10271065 FORWARD LENGTH=1860
Length=1860
Score = 2170 bits (1175), Expect = 0.0
Identities = 1416/1530 (93%), Gaps = 25/1530 (2%)
Strand=Plus/Plus
Query 71 GGAGGATGAGAATTACAACGAGGCAGAAGTCGATGTGCAACACGTGACCTCGACAAAATC 130
||| ||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 161 GGAAGATGATAATTACAGCGAGGCAGAAGTCGATTTGCAACCCGTGACCTCGACAAAATC 220
Query 131 TACGAGCCAGGTGATCACaaaaa--aaTCTCTAGTAGCAGCACAAAAAGAAAGTCTGGTT 188
||| ||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 221 TACTAGCCAGGTGAT-A-AAAAAGGAATCTCTAGTAGCAGCACAAAAAGAAATTCTGGTT 278
Query 189 AGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGCTAGGACTCTTCTTATTTATTAC 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGCTAGGACTCTTCTTATTTATTAC 338
Query 249 CAATGGAACGTTGATAAGTTGTTATCTGTGTATATTGATCAAGGCAAAGATCATATGTTT 308
|||||||||||||| |||||||| ||||||| | ||||||||||||||||| |||||||
Sbjct 339 CAATGGAACGTTGAGAAGTTGTTCTCTGTGTTTGCTGATCAAGGCAAAGATCGTATGTTT 398
Query 309 TCTTGTGCTGGTCTTACTGTTTTTGACCCTTCTTTAGTTACTTCAAAGAAGACGATGAAC 368
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 399 TCTTGTGCTGGTCTTACTGTTTTTGTTCCTTCTTTAGTTACTTCGAAGAAGACTATGAAA 458
Query 369 TGTGATGTCTGCATGGAAGATGATTTACCAAGTGATGTGATGACGAGAATGGAGTGTGGT 428
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 459 TGTGATGTCTGCATGGAAGATGATTTACCAAGTAATGTGATGACGAGAATGGAATGTGGT 518
Query 429 CATAGCTTTTGCAATGATTGTTGGA-AGGAACATTTTACTGTGAGGATTAATGAAGGTGA 487
||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 519 CATAGGTTTTGCAATGATTGTTGGATAGGG-CATTTTACTGTGAAGATTAATGAAGGTGA 577
Query 488 AAGCAAAAGGATTCTATGTATGGCTCATAAATGTAAAGCGATTTGCGATGAAGATGTTGT 547
|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 578 AAGCAAGAGGATTCTATGTATGGCTCATGAATGCAAAGCGATTTGCGATGAAGATGTTGT 637
Query 548 TAGGAAGCTAGTTAGTCCGGAATTAGCTGAGAAGTATGATCGTTTCCTTATTGAATCTTA 607
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 638 TAGGAAGCTAGTTAGTCCTGAATTAGCTGACAGGTATGATCGTTTCCTTATTGAATCTTA 697
Query 608 TGTGGAAGATAACAAGATGGTGAAGTGGTGTCCAAGTATACCGCATTGCGGGAGTGCGAT 667
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 698 TGTGGAAGATAACAATATGGTGAAGTGGTGTCCAAGTAAACCGCATTGCGGGAGTGCGAT 757
Query 668 ACG-AAAGATCGAAGATG---ATGACGTCGTTGAGGTTGAATGTTCATGTGGACTTCAGT 723
||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 758 ACGGAAA-ATCGAAGATGGTCATGACGTCGTTGAGGTTGGATGTTCATGTGGACTTCAGT 816
Query 724 TCTGTTTCAGTTGTTTGAGCGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 783
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TCTGTTTCAGTTGTTTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 876
Query 784 GGAAAAAGAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATAACGGTTAATACGAAGC 843
||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 877 GGAAAAAGAAGTGTGAAGACGAGTCTGAGACGGTTAATTGGATAACCGTTAACACAAAGC 936
Query 844 TGTGTCCCAAATGTTA-CAAACCTATTTCAAAACA-AGATGGTTGCAATCTCATGACTTG 901
|||||||||||||| | |||||||||| ||||| | ||| ||||||||||||||||||||
Sbjct 937 TGTGTCCCAAATGT-AGCAAACCTATT-CAAAAGAGAGACGGTTGCAATCTCATGACTTG 994
Query 902 TAAGTGTGGGCAGCATTTTTGTTGGCTGTGTGGTGAAGCTACTGGG-GCA-AGTCATACT 959
||||||||||||||||||||| |||||||||||| |||||||||| | | | |||||||
Sbjct 995 TAAGTGTGGGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACTGGAAG-AGA-TCATACT 1052
Query 960 G-TGCAGAGTATTGCTGGTCATAGTTGTGGTCGGTACAAAGATGACAAAGTAAGGCAAAT 1018
| | |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 1053 TATACT-AGTATTGCCGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAATT 1111
Query 1019 GGAGAGAGC-CAAAAGGGATTTAGACAGGTATACGCATTACCATTACCGCTACAAAGCAC 1077
||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1112 GGAGAGAGCTCAAA-GGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCAC 1170
Query 1078 ATACCGATTCTTTAAAGCTCGAGGATAAACTTAGGAAGAGTATCCTTGAGAAGGCAGTGT 1137
||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1171 ATATCGATTCATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCTTGAGAAGGCAGTAT 1230
Query 1138 CAAATGCTGAAACCAAGGATCAACAAG-TGTTTAAAGAATACAGCTGGGTTATAGATGCA 1196
||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct 1231 CAAATTCTGAAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGCTGGGTTACAGATGCA 1289
Query 1197 GTCAACAGGTTATTCAGATCAAGAAAGATTCTTTCGTATTCTTATCCTTTCGCGCTCTAC 1256
|||||| ||||||||| ||| | |||||||||| | || |||||||||||| ||||
Sbjct 1290 GTCAACCGGTTATTCATATCGCGGCGGATTCTTTCGCAATCGTATCCTTTCGCGTTCTAT 1349
Query 1257 ATGTTTGGTGAAGAGTTGTTTAAAGATGAGATGAGCGACGAAGAGAGAGAGATGAAGAAG 1316
||||| ||||||||| |||| |||||||||||||| || ||||||||||||| ||||||
Sbjct 1350 ATGTTCGGTGAAGAGCTGTTCAAAGATGAGATGAGTGAAAAAGAGAGAGAGATAAAGAAG 1409
Query 1317 AATCTGTTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAAACTTTCTAAGATT 1376
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1410 AATCTGTTTGAAGATCAGCAGCAGCAACTTGAAGGTAATGTTGAGAAACTTTCCAAGATT 1469
Query 1377 TTAGAAGAGCCTTTTGATGAGTATGATCATGAGAAAGTTGTGGATATGAAGAGACACCTC 1436
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1470 TTAGAAGAGCCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAGATGATGAGACACCTC 1529
Query 1437 AACAATTTGAGTAATGCGGTTGATAACCTCTGCAAGAAAATGTATGAGTGCATTGAGAAT 1496
| |||||||| | || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1530 ACCAATTTGACTGCTGTGGTTGATAACCTCTGCAAGGAAATGTATGAGTGCATTGAGAAT 1589
Query 1497 GAATTACTAGGTCCAATACAATTTGGAATCCACAACATTGCACCTTACAGATCAAAGGGA 1556
|| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1590 GAGTTATTAGGTCCAATACAATTTGGAAACCACAACATTGCACCTTACAGATCAAAGGGA 1649
Query 1557 ATAGAACAAGCAACTGAGTTTTGTGCTGAA 1586
||||||||||||||||||||||||||||||
Sbjct 1650 ATAGAACAAGCAACTGAGTTTTGTGCTGAA 1679
> AT3G27720.1 | Symbols: ARI4, ATARI4 | IBR domain containing protein
| chr3:10271876-10273621 FORWARD LENGTH=1482
Length=1482
Score = 1371 bits (742), Expect = 0.0
Identities = 946/1042 (91%), Gaps = 23/1042 (2%)
Strand=Plus/Plus
Query 555 CTAGTTAGTC-CGGAATTAGCTGAGAAGTATGATCGTTTCCTTATTGAATCTTATGTGGA 613
|||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 427 CTAGTTAG-CACGGAGTTAGCTGAGAAGTTTGATCGTTTCCTTATTGAATCTTATGTGGA 485
Query 614 AGATAACAAGATGGTGAAGTGGTGTCCAAGTATACCGCATTGCGGGAGTGCGATACGAAA 673
||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 486 AGATAACAATATGGTGAAGTGGTGTCCAAGCACACCGCATTGCGGGAATGCGATACGAAA 545
Query 674 GATCGAAGATGAT---GACGTCGTTGAGGTTGAATGTTCATGTGGACTTCAGTTCTGTTT 730
||| |||||||| || || | |||||| |||||||||||||||||||||||||||||
Sbjct 546 TATCAAAGATGATGGCGATGTTGATGAGGTGGAATGTTCATGTGGACTTCAGTTCTGTTT 605
Query 731 CAGTTGTTTGAGCGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAAA 790
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CAGTTGTTTAAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAAA 665
Query 791 GAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATAACGGTTAATACGAAGCTGTGTCC 850
||| |||| ||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 666 GAAATGTGAAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGCTGTGTCC 725
Query 851 CAAATGTTA-CAAACCTATTTCAAAACA-AGATGGTTGCAATCTCATGACTTGTAAGTGT 908
|||||| || |||||||| ||||||| | |||||||||||||| ||||||||||||||||
Sbjct 726 CAAATG-TAGCAAACCTA-TTCAAAAGAGAGATGGTTGCAATCACATGACTTGTAAGTGT 783
Query 909 GGGCAGCATTTTTGTTGGCTGTGTGGTGAAGCTACTGGGGCA-AG-TCATAC-TGTGCAG 965
|||||||||||||| |||||||||||| |||||||| || | || |||| | | | | |
Sbjct 784 GGGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACT--GGAAGAGATCATTCTTATTC-G 840
Query 966 AGTATTGCTGGTCATAGTTGTGGTCGGTACAAAGATGACAAAGTAAGGCAAATGGAGAGA 1025
|||||||| |||||||||||||||||||||||||| || ||||| |||||| ||||||||
Sbjct 841 AGTATTGCCGGTCATAGTTGTGGTCGGTACAAAGAAGAAAAAGTGAGGCAATTGGAGAGA 900
Query 1026 GCCAAAAGGGATTTAGACAGGTATACGCATTACCATTACCGCTACAAAGCACATACCGAT 1085
||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 901 GCCCAAAGGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCACATATCGAT 960
Query 1086 TCTTTAAAGCTCGAGGATAAACTTAGGAAGAGTATCCTTG-AGAAGGCAGTGTCAAATGC 1144
|| |||||||| ||||| ||||||| ||||||||||| || |||||||||||| |||| |
Sbjct 961 TCATTAAAGCTAGAGGACAAACTTAAGAAGAGTATCC-TGAAGAAGGCAGTGTTAAATTC 1019
Query 1145 TGAAACCAAGGATCAACAA-GTGTTTAAAGAATACAGCTGGGTTATAGATGCAGTCAACA 1203
|||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||
Sbjct 1020 TGAAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGTTGGATTATAGATGCAGTCAACC 1078
Query 1204 GGTTATTCAGATCAAGAAAG-ATTCTTTCGTATTCTTATCCTTTCGCGCTCTACATGTTT 1262
|||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 1079 GGTTATTCAGATCAAG-AAGAATTCTTTCGTATTCTTATCCTTTCGTGTTCTACATGTTT 1137
Query 1263 GGTGAAGAGTTGTTTAAAGATGAGATGAGCGACGAAGAGAGAGAGATGAAGAAGAATCTG 1322
|| |||||||||| |||||||| |||||||| ||||||||| | || ||||||||||||
Sbjct 1138 GGCAAAGAGTTGTTCAAAGATGATATGAGCGATGAAGAGAGAAATATAAAGAAGAATCTG 1197
Query 1323 TTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAAACTTTCTAAGATTTTAGAA 1382
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 1198 TTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAGACTTTCCAAGATATTAGAA 1257
Query 1383 GAGCCTTTTGATGAGTATGATCATGAGAAAGTTGTGGATATGAAGAGACACCTCAACAAT 1442
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||
Sbjct 1258 GAGCCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAGATGATGAGACACCTCACCAAT 1317
Query 1443 TTGAGTAATGCGGTTGATAACCTCTGCAAGAAAATGTATGAGTGCATTGAGAATGAATTA 1502
|||| | || ||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1318 TTGACTGCTGTGGTTGATAACCTCTGCAAGGAAATGTATGAGTGCATTGAGAATGAGTTA 1377
Query 1503 CTAGGTCCAATACA-ATTTGGAATCCACAACATTGCACCTTACAGATCAAAGGGAATAGA 1561
|||||||| | || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTAGGTCCACT-CATATCTGGAATCCACAACATTGCACCTTACAGATCAAAGGGAATAGA 1436
Query 1562 ACAAGCAACTGAGTTTTGTGCT 1583
|||||| ||||||||| ||||
Sbjct 1437 ACAAGCTGCTGAGTTTTCTGCT 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80270671455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5