BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936543
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27750.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1000 0.0
> AT3G27750.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING:
12 growth stages; BEST Arabidopsis thaliana protein match
is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1);
Has 106 Blast hits to 106 proteins in 16 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:10284808-10285874 FORWARD LENGTH=1067
Length=1067
Score = 1000 bits (541), Expect = 0.0
Identities = 642/690 (93%), Gaps = 10/690 (1%)
Strand=Plus/Plus
Query 20 TAATGGCGCTTTCTCTCAGCCAGACTCGACCACCAAGCCTTAGCC-T-----TAACCTTA 73
||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 11 TAATGGCGCTTTCTCTCAGCCAGACTCGACCACCAAGCCTTAGCCATAGCCATACCCTTA 70
Query 74 GCGTCGTCGTTCCTAAGAGAAGGTTAGTTTCAATCCGATGCGGTCCACGCGACAACCGCG 133
||||| ||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||
Sbjct 71 GCGTCATCGTTCCTAAGAGAACGTTCGTTTCGATCCGATGCGGTCCACGAGACAACCGCG 130
Query 134 GACCACTTCTCAAAGGTCGAATCCTAAGCACCGAAGCAATCCAATCGATCCAATCTCTCA 193
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 131 GACCACTTCTCAAAGGCCGAATCCTAAGCACCGAAGCAATCCAATCAATCCAATCTCTCA 190
Query 194 AACGAGCACATCGAACCGGTAG-CTCAATCTCTCTTACCCTCCGTCCTCTCCGCCGTCTC 252
||||||| |||||||||||| | ||| |||| |||||||||||||||||||||||||||
Sbjct 191 AACGAGCTCATCGAACCGGT-GTCTCCCTCTCCCTTACCCTCCGTCCTCTCCGCCGTCTC 249
Query 253 ATAAAATCCGATCTCGTCTCCGTCCTCCGTGAGCTTCTCCGTCAAGACTACTGCACACTC 312
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 250 ATAAAATCCGATCTCATCTCCGTCCTCCGTGAGCTTCTCCGTCAAGACTATTGCACACTC 309
Query 313 GCTGTCCATGTTCTCTCCACTCTTCGTTCAGAGTATCCTCCTCTCGACCTTGTTCTATAC 372
||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 310 GCTGTCCATGTACTCTCCACTCTCCGTACAGAGTATCCTCCTCTTGACCTTGTTCTATAC 369
Query 373 GCCGATATCGTTAATGCTCTTTCTAGGAACAAAGAGTTCGATGAGATAGATCGTCTTATT 432
|| || || |||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 370 GCAGACATTGTTAATGCTCTTACGAGGAATAAAGAGTTCGATGAGATAGATCGTCTTATT 429
Query 433 GGAGAAATTGAAGGAATTGATCAAAGAAGTGATGATAAGGCTTTAGCTAAGTTGATTAGA 492
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GGTGAAATTGATGGAATTGATCAAAGAAGTGATGATAAGGCTTTAGCTAAGTTGATTAGG 489
Query 493 GCGGTGGTTGGAGCTGAGAGGAGAGAGTCGGTGGTTAGGGTTTATACCTTGATGAGAGAA 552
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 490 GCTGTGGTTGGAGCTGAGAGGAGAGAGTCGGTGGTTAGGGTTTATACCTTGATGAGGGAA 549
Query 553 AGTGGGTGGGGGTCTGAGTCGTGGGAGGCTGATGAGTATGTGGCTGAGGTTCTGAGCAAG 612
||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||| |||
Sbjct 550 AGTGGTTGGGGGTCTGAGTCATGGGAGGCTGATGAGTATGTCGCTGAGGTTTTGAGTAAG 609
Query 613 GGTCTCTTGAGACTAGGAGAGCAAGACTTGGCTGCTCAGGTCTCACTCAAATCTTCAATT 672
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 610 GGTCTCTTGAGACTAGGAGAGCCAGACTTGGCTTCTCAAGTCTCACTCAAATCTTCAATT 669
Query 673 CTAAACCCTTGAATTTTTCGGGTTTTTCGG 702
||||| ||||||||||| |||||||| |||
Sbjct 670 CTAAAACCTTGAATTTT-CGGGTTTT-CGG 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5