BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936544
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27770.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1487 0.0
> AT3G27770.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G62960.1);
Has 158 Blast hits to 157 proteins in 21 species: Archae
- 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 141;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
| chr3:10285657-10287775 REVERSE LENGTH=1324
Length=1324
Score = 1487 bits (805), Expect = 0.0
Identities = 922/975 (95%), Gaps = 21/975 (2%)
Strand=Plus/Plus
Query 9 AGAAAGaaaaaaaTGATTCTTGAGAATGTTTTGGAATTGACCAGCTTTGATTACTGGTTT 68
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 205 AGAAA-AAAAAAATGAATCTTGAGAATGTTTTGGAATTCACCAGCTTTGATTACTGGTTT 263
Query 69 AATTGGAGAGTGTTACTATGTGCTATATGGGTAATAGCTCCAATGATTGTTTCTTTATTC 128
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 264 AATTGGAGAGTGTTACTATGTGCTATATGGGTAATAGTTCCAATGATTGTTTCTTTATTA 323
Query 129 GTCTTATGGAAGTACGAAGATAGTTCAGTACCAACTCAACCATCACTTAATGGTAGTGGT 188
|||||||||||||| |||||||||||||| | |||||||||||||||| | | | |
Sbjct 324 GTCTTATGGAAGTATGAAGATAGTTCAGTTCAAACTCAACCATCACTT-A----A-T-G- 375
Query 189 AATGATGATGATGCTGATGTTTTGTGCATTGATGATGTTTGGAGACCTTGTTTTGAACAA 248
| | | | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 376 ---G-T-A--A---TGATGTTTTGTGCATTGATGATGTTTGGAGACCTTGTTTTGAACGA 425
Query 249 ATCCATCCGGGTTGGTTGTTGGGTTTTCGGGTTCTCGGGTTTTGTTTCCTTCTTGCTAAC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ATCCATCCGGGTTGGTTGTTGGGTTTTCGGGTTCTCGGGTTTTGTTTCCTTCTTGCTAAC 485
Query 309 AATATTGTCCGGTTTGCTAATCGTGGATGGCGCATTTACTACTATTATACTCAGTGGACA 368
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 486 AATATTGCCCGGTTTGCTAATCGTGGATGGCGTATTTACTACTATTATACTCAGTGGACA 545
Query 369 TTCACATTGATAGCGATCTATTTCGGGATGGGATCATTGCTTTCAATTTATGGATGTTTA 428
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 546 TTCACTTTGATAGCAATCTACTTCGGGATGGGATCATTGCTTTCAATTTATGGATGTTTA 605
Query 429 CAATACAAGAAGCAAGGGAACAC-GAAACTTATTGCTGATCAAGTAGGAATCGATGCAGA 487
||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 606 CAATACAAGAAGCAAGGGAACACTG-GACTTATCGCTGATCAAGTAGGAATCGATGCAGA 664
Query 488 GAATGGGGTTCGTTCGCCCCTTATAGATGGTGACAACATGGTTTCGTTCGAGAAGAGAAA 547
||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAACGGGTTTCGTTCGCCTCTTATAGATGGTGACAACATGGTTTCGTTCGAGAAGAGAAA 724
Query 548 AACTTCTGGTTCAGAGGCACTAAAGTCATATGTTCATCTCTTCCAGATTATATATCAGAT 607
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AACTTCTGGTTCGGAAGCACTAAAGTCATATGTTCATCTCTTCCAGATTATATATCAGAT 784
Query 608 GGGTGCTGGAGCAGCTGTGCTTACAGACAGTATATATTGGACCGTGATTTTCCCGTTTCT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGGTGCTGGAGCAGCTGTGCTTACAGACAGTATATATTGGACCGTGATTTTCCCGTTTCT 844
Query 668 GTCTTTACAGGACTATGAGATGAGTTTCATGACTGTGAATTTGCACACGAGCAACCTAGT 727
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 845 GTCTTTACAGGACTATGAGATGAGTTTCATGACTGTGAATTTGCACACAAGCAACCTCGT 904
Query 728 TTTGCTGCTTATTGACACGTCTCTTAACCGTCTGAAATTTCCCTTGTTCAGGTTCTCTTA 787
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 905 TTTGCTGCTTATTGACACGTTTCTAAACCGTCTGAAATTTCCATTGTTCAGGTTCTCTTA 964
Query 788 CTTCATCTTGTGGACAGGAAGTTTTGTTCTTTTCCAGTGGATTCTCCATATGTTTATCTC 847
||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 965 CTTCATCTTATGGACAGGATGTTTCGTTCTTTTCCAGTGGATTCTCCACATGTTTATCTC 1024
Query 848 CGTAGGGTGGCCATATCCATTTCTCAACCTGTCATTAGACATGGCTCCAGTGTGGTATTT 907
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CGTTGGGTGGCCATATCCATTTCTCAACCTGTCATTAGACATGGCTCCAGTGTGGTATTT 1084
Query 908 GTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTATGCATTAATCGTCAAAATCAA 967
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1085 GTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATTAATCGTCAAAATCAA 1144
Query 968 ATATAAACTCATTTC 982
||| |||||||||||
Sbjct 1145 ATACAAACTCATTTC 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5