BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936547
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27820.1 | Symbols: ATMDAR4, MDAR4 | monodehydroascorbate re... 2643 0.0
> AT3G27820.1 | Symbols: ATMDAR4, MDAR4 | monodehydroascorbate
reductase 4 | chr3:10315114-10318056 FORWARD LENGTH=1777
Length=1777
Score = 2643 bits (1431), Expect = 0.0
Identities = 1592/1669 (95%), Gaps = 14/1669 (1%)
Strand=Plus/Plus
Query 4 gaagaagaagaagaaCG-AACCATGGGAAGAGCTTTCGTGTATGTAATTCTCGGAGGAGG 62
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GAAGAAGAAGAAGAA-GAAACCATGGGAAGAGCTTTCGTGTATGTAATTCTCGGAGGAGG 173
Query 63 TGTTGCTGCTGGTTATGCTGCTCTCGAATTCACTCGTAGAGGTGTCTCCGATGGCGAACT 122
||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 174 TGTTGCTGCTGGTTACGCAGCTCTCGAATTCACCCGTCGAGGTGTCTCCGATGGCGAACT 233
Query 123 CTGTATCATTTCCGAAGAACCCGTTGCACCGTATGAGAGGCCTGCATTAAGCAAAGGTTT 182
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 234 CTGTATCATTTCCGAAGAACCCGTTGCACCGTATGAGAGGCCTGCCTTAAGCAAAGGTTT 293
Query 183 TCTGCTGCCAGAAGCGCCGGCACGGCTTCCTTCTTTCCACACTTGTGTTGGAGCTAATGA 242
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TCTGCTGCCAGAAGCTCCTGCACGGCTTCCTTCTTTCCACACTTGTGTTGGAGCTAATGA 353
Query 243 TGAGAAGCTTACTCCTAAATGGTACAGGGATCATGGAATTGAATTGGTCCTTGGAACTCG 302
|||||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 354 TGAGAAGCTTACACCGAAATGGTACAAGGATCATGGAATTGAATTGGTACTTGGAACTCG 413
Query 303 TGTTAAGTCTGTTGATGTTAGGAGGAAGACTCTTTTATCGAGCACAGGGGAGACTATAAG 362
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGTTAAGTCCGTTGATGTGAGGAGGAAGACTCTTTTATCGAGCACAGGGGAGACTATAAG 473
Query 363 TTACAAATTCTTGATCATTGCAACAGGTGCTCGGCCGTTGAAGCTCGAAGAATTTGGGGT 422
|||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 474 TTACAAATTCTTGATCATTGCAACAGGTGCCCGGGCGTTGAAGCTTGAAGAATTTGGGGT 533
Query 423 GGAAGGCTCAGATGCTGAAAATGTTTGTTACTTACGAGATCTGGCCGATGCAAATAGGCT 482
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 534 GGAAGGCTCAGATGCTGAAAATGTTTGTTACTTACGAGATCTAGCTGATGCAAATAGGCT 593
Query 483 TGCCACTGTGATTCAATCAAGCTCCAATGGGAATGCTGTTGTTATTGGTGGTGGCTACAT 542
||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| ||
Sbjct 594 TGCCACTGTGATTCAATCAAGCTCCAACGGGAATGCGGTTGTTATCGGCGGTGGCTATAT 653
Query 543 CGGCATGGAGTGTGCTGCATCTTTAGTGATCAACAAAATCAATGTGACAATGGTTTTCCC 602
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 CGGTATGGAGTGTGCTGCATCTTTAGTGATCAACAAAATCAATGTGACGATGGTTTTCCC 713
Query 603 AGAGGCTCACTGCATGGCACGTCTCTTTACGCCTAAGATTGCAAGTTTGTATGAAGACTA 662
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 714 AGAGGCTCACTGCATGGCACGTCTCTTTACGCCCAAGATTGCAAGTTTGTATGAAGACTA 773
Query 663 CTACAGGGCTAAAGGCGTAAAATTCGTAAAAGGAACGGTTTTGACATCATTTGAGTTTGA 722
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 774 CTACAGGGCTAAAGGCGTAAAATTTATAAAAGGAACGGTTTTGACATCATTTGAGTTTGA 833
Query 723 CTCGAACAAAAAGGTCACTGCGGTTAATCTCAAAGACGGGAGTCACTTACCAGCAGACTT 782
||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 834 CTCGAACAAAAAGGTTACTGCAGTTAATCTCAAAGACGGGAGCCACTTACCAGCCGACTT 893
Query 783 GGTTGTGGTTGGAATCGGGATACGACCAAACACAAGCTTGTTTGAAGGACAGTTAACAAT 842
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGTTGTGGTTGGTATCGGGATACGACCAAACACAAGCTTGTTTGAAGGACAGTTAACAAT 953
Query 843 AGAGAAAGGAGGGATAAAAGTGAACAGCAGAATGCAGTCAAGTGACAGCTCGGTGTATGC 902
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 AGAGAAAGGAGGGATAAAAGTGAACAGCAGAATGCAGTCAAGTGACAGCTCAGTGTATGC 1013
Query 903 AATAGGCGATGTAGCTACATTTCCAGTGAAACTATTTGGCGAAATGAGAAGGCTTGAGCA 962
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1014 AATAGGCGATGTAGCTACATTTCCAGTGAAACTATTTGGCGAAATGAGGAGGCTTGAGCA 1073
Query 963 CGTGGACTCAGCTAGGAAATCTGCGCGACATGCAGTTTCAGCCATCATGGATCCAATAAA 1022
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 CGTGGACTCAGCTAGGAAATCTGCGCGACACGCAGTTTCAGCCATCATGGATCCAATAAA 1133
Query 1023 GACCGGAGAATTTGACTACTTACCGTTCTTCTACTCAAGGGTCTTCGCCTTCTCATGGCA 1082
||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1134 GACCGGAGACTTTGATTACTTACCATTTTTCTACTCAAGGGTCTTCGCATTCTCATGGCA 1193
Query 1083 ATTCTATGGAGACCCTACAGGTGATGTTGTGCACTTTGGAGAGTATGAAGACGGGAAATC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 ATTCTATGGAGACCCTACAGGTGATGTTGTGCACTTTGGAGAGTATGAAGACGGGAAATC 1253
Query 1143 ATTTGGAGCGTATTGGGTTAAAAAGGGTCACCTTGTTGGATCTTTTCTTGAAGGAGGAAC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1254 ATTTGGAGCGTATTGGGTTAAAAAGGGTCACCTTGTTGGATCTTTTCTTGAAGGAGGCAC 1313
Query 1203 TAAAGAAGAATATGAAACTATCTCGAAGGCGACACAATTGAAACCAGCTGTGACCATTGA 1262
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1314 TAAAGAAGAATATGAAACTATCTCAAAGGCGACACAATTGAAACCAGCTGTGACTATTGA 1373
Query 1263 TTTGGAAGAATTGGAAAGAGAAGGACTCGGGTTTGCTCACACCGTTGTGAGTCAGCAGAA 1322
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 TTTGGAAGAATTGGAAAGAGAAGGACTCGGGTTTGCTCACACGGTTGTGAGTCAGCAGAA 1433
Query 1323 AGTTCCTGAAGTTAAGGATATTCCGAGCGCTGAGATGGTGAGGCAATCTGCAAGTGTGGT 1382
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1434 AGTTCCTGAAGTTAAGGATATTCCGAGCGCTGAGATGGTGAAGCAATCTGCAAGTGTGGT 1493
Query 1383 CATGATAAAGAAGCCTTTGTATGTATGGCACGCGGCTACTGGAGTCGTTGTGGCTGCATC 1442
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1494 CATGATAAAGAAGCCTTTGTATGTATGGCACGCAGCTACTGGAGTCGTTGTGGCTGCATC 1553
Query 1443 TGTGGCTGCGTTCGCGTTTTGGTACGGAAGGAGACGCCGTAGATGGTGAAAGCCCTCTTC 1502
|||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 1554 TGTGGCTGCGTTCGCGTTTTGGTATGGGAGGAGACGCCGTAGATGGTGAG-GAAAAAAAA 1612
Query 1503 AAGTGCTTTTAAAACAGGGGTTGAATTCATTGGAAATGGAAACTTGCTGTTGTTTGTAGC 1562
|| | ||| || | | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1613 AACT-CTTC-AA----GTG-TTGGATTCATTGGAAATGGAA-CTTGCTGTTGTTTGTAGC 1664
Query 1563 ATTGGTGGGA-AAATATAGAAGTGGAGAGTCCAAAACTACTCAATGTGATTACATTGGTA 1621
|||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1665 ATTGGTGGGAGAAATATAGAAG-GGAGAGTCCAAA-CTACTCAATGTGATTACATTGGTA 1722
Query 1622 TACGATTATTATATGCTTCTTTTAAAATGCATAAATGTTTCCACTACAA 1670
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1723 TACGATTATTATATGCTTCTTTTAAAATGCATAAACGTTTCCACTACAA 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82529695980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5