BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936555

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27865.1 | Symbols:  | snoRNA | chr3:10328510-10328601 FORWA...   132    1e-30


> AT3G27865.1 | Symbols:  | snoRNA | chr3:10328510-10328601 FORWARD 
LENGTH=92
Length=92

 Score =  132 bits (71),  Expect = 1e-30
 Identities = 84/90 (93%), Gaps = 2/90 (2%)
 Strand=Plus/Minus

Query  35   GCTCAGAGTATTGCATAATGTGCTCAAAGGAGAGGTTATCAATCTCTCCTCATACAAGAG  94
            ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct  92   GCTCAGAGTATTGCATAATGTGCTCAAAGAAGAGGTTATCAAGCTCTTCTCATACAAGAG  33

Query  95   GTGTCAGAAATTTAGCATT-ATTCATCATC  123
            |||||||||||| |||||| || |||||||
Sbjct  32   GTGTCAGAAATTAAGCATTGAT-CATCATC  4



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8400325617


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5