BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936558

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27884.1 | Symbols:  | other RNA | chr3:10346155-10348282 RE...   143    1e-33


> AT3G27884.1 | Symbols:  | other RNA | chr3:10346155-10348282 
REVERSE LENGTH=738
Length=738

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 135/163 (83%), Gaps = 3/163 (2%)
 Strand=Plus/Plus

Query  112  GTAAAAATATCACTGGAGGAGTTTTTTATGTGGATGTTATAATAGACATGACTCATTTGT  171
            ||||||||||||||||||||| | |||| |||||||||| || || | ||| || ||  |
Sbjct  295  GTAAAAATATCACTGGAGGAGATATTTACGTGGATGTTA-AAGAGGCCTGATTCGTTACT  353

Query  172  CTAATTATAAA-TACGACTTATGTACATATATGGCATGCCCTATTGCACCTGGTGCCTTC  230
            ||| | |  || |||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct  354  CTACT-AGCAACTACGACTTATGTGCATGTATGGCATGCCCTGTTGCACCTGGTGCCTTC  412

Query  231  GTGCTTCCCCTTGACAATATCATTCCTTTTTATCCACTGTTGA  273
            ||||||||||| |||||| |  ||| ||  |||||| || |||
Sbjct  413  GTGCTTCCCCTAGACAATCTTTTTCGTTCATATCCAATGGTGA  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5