BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936560
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27910.1 | Symbols: | Galactose oxidase/kelch repeat superf... 946 0.0
> AT3G27910.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:10357232-10358116 REVERSE LENGTH=885
Length=885
Score = 946 bits (512), Expect = 0.0
Identities = 668/745 (90%), Gaps = 4/745 (1%)
Strand=Plus/Plus
Query 46 AGATCTATGTTCTCGGTGGATGCATCAATGGTGAGCTGACCTCTAATGTGTTTGTTATCG 105
||||||||||| | |||||||| |||||||| || |||| |||||||||||||||||||
Sbjct 143 AGATCTATGTTTTTGGTGGATGTATCAATGGCGATATGACTTCTAATGTGTTTGTTATCG 202
Query 106 ATTGCCTACATAGCACGTTTCGATTTCTTCCTAGTATGCGTGTGTCACGTGGCTGTGCGG 165
||||||||||| | || |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 203 ATTGCCTACATGGAACATTTCAATTTCTTCCTAGTATGCGTGTGCCACGTGGCTGTGCGG 262
Query 166 CGTTTGGTATTGTAGATGGGAAGATTTATGTAATCGGAGGGTATAATAAGGCAGATTCGT 225
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 263 CGTTTGGTATCGTAGATGGGAAGATTTATGTAATTGGAGGGTATAATAAGGCAGATTCGT 322
Query 226 TGGATAATTGGGTTGAGGTTTTTGACCTCGAGAAGCAAACTTGGGAGTCTTTTTCAGGTT 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 323 TGGATAATTGGGTTGAGGTTTTTGACCTCGAGAAGCAAACTTGGGAGTCTTTTTCAGGAT 382
Query 286 TGTGTAATGAAGATTTATACAAGATAACGCTCAAGAGTGTTGTGATGAACGAGAAGATTT 345
||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 383 TGTGTAATGAAGAGTTGTCCAAGATAACGCTCAAGAGTGTTGTGATGAACAAGAAGATTT 442
Query 346 ACATAATGGATCGAAGAACTAACGTTGTTTACGATCCTAAAAAAGGTGTATGGGAGAAGG 405
||||||||||||| ||| | | |||||| ||||||||| |||||||||||||||| ||
Sbjct 443 ACATAATGGATCGTGGAAATGGCATTGTTTTCGATCCTAAGAAAGGTGTATGGGAGAGGG 502
Query 406 ACTTCTTATTGAATAGTGATTGGAAAGTTGGTTCGTGCGTTATTGATAACATGTTGTACA 465
||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 503 ACTTCTTATTGGATAGAGATTGGGTAGTTGGTTCGTGCGTTATTGACAACATGTTGTATA 562
Query 466 CATTTGGTTTTGATTGTCAAAAAAGTGTTTATCGAATACACGTCTATGATCCAAGAGTGA 525
| ||||||||||| || |||| || |||||||| ||| |||||||||||||| || |
Sbjct 563 CTTTTGGTTTTGACAGTGTAAAACGTATTTATCGAGTACGTGTCTATGATCCAAGTGTTA 622
Query 526 GGGTGTGGAGTTTCGTGAAAGGTGTTGA-GAATATACCAAAGATGCATGAAATTCAAGGA 584
||||||||||||||||||||||| |||| || ||||||||| ||| ||| || || ||
Sbjct 623 GGGTGTGGAGTTTCGTGAAAGGTATTGAAGA-TATACCAAAAATGGATGGAACTCTTGGG 681
Query 585 TCTAGAATGGCGAATCATGGCGGAGATCTCACAGTTTTGCTCAACCTTGATAAAAGTGGA 644
||||||||||| |||||||||||| | ||| | ||||||||||||||||||||| ||||
Sbjct 682 TCTAGAATGGCAAATCATGGCGGAAAGCTCGTAATTTTGCTCAACCTTGATAAAAATGGA 741
Query 645 GGAACAGAGATTTGGTGTATACAAGTTGCATTGGAAAGGCGAGGAGAACACAG-AGAGAT 703
||||||||| ||||||||||| || ||||| |||||||||||||| |||| || ||||||
Sbjct 742 GGAACAGAGCTTTGGTGTATAAAAATTGCACTGGAAAGGCGAGGACAACA-AGGAGAGAT 800
Query 704 TTGGGGAAAGGTTTTGTGGTCTAATCTTGTGCTAACTTTGGAAAATTCATCGACAATTGT 763
|||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 801 TTGGGGAAAGATTTTGTGGTATAATCTTGTGCTAACTTTGGAAAATTCATCAACAATTGT 860
Query 764 TCAATGTTTGGATGTAACAATTTGA 788
| ||||||| ||| |||| ||||||
Sbjct 861 TGAATGTTTCGATATAACGATTTGA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5