BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936568

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:268422...   309    1e-83
  AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3...   230    1e-59


> AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:26842270-26845190 
REVERSE LENGTH=2480
Length=2480

 Score =  309 bits (167),  Expect = 1e-83
 Identities = 200/216 (93%), Gaps = 1/216 (0%)
 Strand=Plus/Plus

Query  174  AAACAATTATTTCTCCGGCCAGATTTCGGGAGGTTTCAAGTCGACGGAGTATCTTGATCT  233
            ||| || ||||| ||||||  |||| |||||||||| |||||||||||||||||||||||
Sbjct  605  AAA-AACTATTTATCCGGCGGGATTCCGGGAGGTTTTAAGTCGACGGAGTATCTTGATCT  663

Query  234  GTCGTCAAATCTCATCAAAGGCTCGTTGCCGTCACGTTTCAGAGGGAATCGTTTACGCTA  293
             ||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  664  CTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTCTACGCTA  723

Query  294  TTTCAACGCTTCGAACAACAGAATCTCCGGCGAGATTCCGTCAGGTTTCGCCGATGAAAT  353
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  724  TTTCAACGCTTCGTACAACAGAATCTCCGGCGAGATTCCGTCAGGTTTCGCCGACGAAAT  783

Query  354  CCCGGAAAACGCCACCGTCGATCTCTCATTCAACCA  389
            ||||||| |||||||||| |||||||||||||||||
Sbjct  784  CCCGGAAGACGCCACCGTTGATCTCTCATTCAACCA  819


> AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3:3000759-3003179 
REVERSE LENGTH=2421
Length=2421

 Score =  230 bits (124),  Expect = 1e-59
 Identities = 150/163 (92%), Gaps = 0/163 (0%)
 Strand=Plus/Minus

Query  1    TCTTGACGACCACTAGCATCAATGGCGCAGAAGAAAGCAGAGCCACCGAACGCCGCCGCG  60
            ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| 
Sbjct  163  TCTTGACGACCACTAGCGTCAATGGCGCAGAAGAAAGCAGAGCCGCCGAACGACGCCGCA  104

Query  61   ATTGGGCCAGAGGATCCAAATCCGGATCCGGGTTTGGGCAAAAACAGgagaatgagagag  120
            || || || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  103  ATCGGACCGGAGGATCCAAATCCGGATCCGGGTTTGGGCAAATACAGGAGAATGAGAGAG  44

Query  121  agaaagaggagaaagaaATGGGCTTCCATTGGAGATGAAGTTC  163
            |||||||||||| || || ||| ||||||||||| ||||||||
Sbjct  43   AGAAAGAGGAGAGAGCAACGGGTTTCCATTGGAGGTGAAGTTC  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19704957608


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5