BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936575

Length=1555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28720.1 | Symbols:  | unknown protein; Has 4 Blast hits to ...   300    3e-80


> AT5G28720.1 | Symbols:  | unknown protein; Has 4 Blast hits to 
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr5:10776131-10776952 FORWARD LENGTH=342
Length=342

 Score =  300 bits (162),  Expect = 3e-80
 Identities = 252/293 (86%), Gaps = 15/293 (5%)
 Strand=Plus/Plus

Query  441  GAATTCGGTGAAACAAACAAAAA-ATATATAACCGTGTTACAAAATAAGCCTCTTCCGTT  499
            ||||| |||||||| |||||||| ||||||||| ||| ||||||||||||||||||| ||
Sbjct  51   GAATTTGGTGAAACCAACAAAAATATATATAACTGTGCTACAAAATAAGCCTCTTCCTTT  110

Query  500  CCAAGATTTACTAGATGTTATACATAGCAAACACGATCTTGAGCAAGACTCTCGCTATTC  559
            | ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct  111  CAAAGATTTACTAGATGTTATACATAGCAAACATGATCTTGAGCAAGATTTTCGCTATTC  170

Query  560  ACCCCACATGCTTGGAGTTCATCTTGATCTCGAAAAAGAACCATATAatgatgatgatga  619
            ||||||||  ||||||||||| |||||||||||| |||||||||||   |||||||||| 
Sbjct  171  ACCCCACACACTTGGAGTTCAGCTTGATCTCGAACAAGAACCATAT---GATGATGATG-  226

Query  620  tgatgatgatgTGCCAGTGGATGACACAGAAGAAAATGGTCGAACCGTAGTTCC-TCCGG  678
             | || ||     ||||  ||||||| ||||||| |||||| ||| | |  ||| |  | 
Sbjct  227  -G-TG-TG-----CCAGCAGATGACATAGAAGAACATGGTCAAACAGCACCTCCCTTTG-  277

Query  679  ATAATTCTAATTTAAGAGCATATGATGATGATTTACCACGACTCTCTCGGTCA  731
            | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  278  AGAATTCTAATCTAAGAGCATATGATGATGATTTACCACGACTCTCTCGGTCA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 76756633305


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5