BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936575 Length=1555 Score E Sequences producing significant alignments: (Bits) Value AT5G28720.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 300 3e-80 > AT5G28720.1 | Symbols: | unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:10776131-10776952 FORWARD LENGTH=342 Length=342 Score = 300 bits (162), Expect = 3e-80 Identities = 252/293 (86%), Gaps = 15/293 (5%) Strand=Plus/Plus Query 441 GAATTCGGTGAAACAAACAAAAA-ATATATAACCGTGTTACAAAATAAGCCTCTTCCGTT 499 ||||| |||||||| |||||||| ||||||||| ||| ||||||||||||||||||| || Sbjct 51 GAATTTGGTGAAACCAACAAAAATATATATAACTGTGCTACAAAATAAGCCTCTTCCTTT 110 Query 500 CCAAGATTTACTAGATGTTATACATAGCAAACACGATCTTGAGCAAGACTCTCGCTATTC 559 | ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| Sbjct 111 CAAAGATTTACTAGATGTTATACATAGCAAACATGATCTTGAGCAAGATTTTCGCTATTC 170 Query 560 ACCCCACATGCTTGGAGTTCATCTTGATCTCGAAAAAGAACCATATAatgatgatgatga 619 |||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||| Sbjct 171 ACCCCACACACTTGGAGTTCAGCTTGATCTCGAACAAGAACCATAT---GATGATGATG- 226 Query 620 tgatgatgatgTGCCAGTGGATGACACAGAAGAAAATGGTCGAACCGTAGTTCC-TCCGG 678 | || || |||| ||||||| ||||||| |||||| ||| | | ||| | | Sbjct 227 -G-TG-TG-----CCAGCAGATGACATAGAAGAACATGGTCAAACAGCACCTCCCTTTG- 277 Query 679 ATAATTCTAATTTAAGAGCATATGATGATGATTTACCACGACTCTCTCGGTCA 731 | ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 278 AGAATTCTAATCTAAGAGCATATGATGATGATTTACCACGACTCTCTCGGTCA 330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76756633305 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5