BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936587
Length=518
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domai... 717 0.0
AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domai... 374 6e-103
> AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:6824322-6825459 FORWARD LENGTH=1138
Length=1138
Score = 717 bits (388), Expect = 0.0
Identities = 442/469 (94%), Gaps = 0/469 (0%)
Strand=Plus/Plus
Query 1 TCGAGTTCCGTTACTGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGACG 60
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 349 TCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCG 408
Query 61 TTGTCTACTCCGACGCCGTTTCAGGTTTCGCAGCTGGAATCGGCTGCGTCGGAGAAATCG 120
|||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 409 TTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCG 468
Query 121 TGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGAT 180
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 469 TGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGAT 528
Query 181 TTCGCGTCACGGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAGGTGACGGGGCTTG 240
| || ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 529 TCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTG 588
Query 241 AAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTTGA 300
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 589 AAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTGA 648
Query 301 TGAAAGAAGTGGTTCAATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 360
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 708
Query 361 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCACGTTTGAAG 420
||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 709 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAG 768
Query 421 GAGCTCCAATGGAGCAGCAAGCGTTGCTGGAGCTTGAAGACACGGCGGC 469
||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 769 GAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
> AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:28327886-28329764 FORWARD LENGTH=1879
Length=1879
Score = 374 bits (202), Expect = 6e-103
Identities = 388/476 (82%), Gaps = 20/476 (4%)
Strand=Plus/Plus
Query 1 TCGAGTTCCGTTACTG-AGTCATGATGCAAACGCTTCTCCAATCCGATCTCA-GATTCGA 58
|||| ||||||||| | | |||||||||| ||||| |||||||| ||||| | ||||||
Sbjct 375 TCGAATTCCGTTACCGTA-TCATGATGCACACGCTCCTCCAATCTGATCT-ACGATTCGG 432
Query 59 CGTTGTCTACTCCGACGCCGTTTCAGGTTTCGCAGCTGGAA-TCGGCTGCGTCGGAGAAA 117
||| || |||||||| |||| || || | ||| || ||| | || || || ||||||
Sbjct 433 CGTAGTTTACTCCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAG 491
Query 118 TCGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGTCAGGAA 176
||||||| ||||||||||||||||||||||||||||| || | |||| |||||||| |||
Sbjct 492 TCGTGAAACACGAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGAA 550
Query 177 CGATTTCGCGTCACGGATCTCGTCCGTACGAAACCTTACCTCGTCGC-GAAGGTGACGGG 235
||||| || |||||| || |||| ||||||||||| ||||| |||| |||| | ||| |
Sbjct 551 CGATTCCGAGTCACGAATGTCGTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGTG 609
Query 236 GCTTGAAGATCGACCGTCCGGTGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAG 293
|||||||||||| || ||||||||||| ||||| || || || || || || || ||
Sbjct 610 GCTTGAAGATCGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAA 667
Query 294 GTTTTGATGAAAGAAGTGGTTCAA-TTGTCGAATAGATTGAATGGGAAACCAGATAAGGA 352
||| | |||||||||||| || | || ||||||||||||||||| || | || || ||
Sbjct 668 GTTCTAATGAAAGAAGTGATT-AGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGA 726
Query 353 A-TCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCA 411
| | ||| |||||||||| ||||||||||||||| ||||| ||||| ||| | || || |
Sbjct 727 AGT-TCAAGATCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTA 785
Query 412 CGTTTGAAGGAGCTCCAATG-GAGCAGCAAGCGTTGCTGGAGCTTGAAGACACGGC 466
|||||||||||||||| | | ||||||||||||||||| ||||||||||| |||||
Sbjct 786 CGTTTGAAGGAGCTCCTA-GAGAGCAGCAAGCGTTGCTTGAGCTTGAAGATACGGC 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24765434471
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5