BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936600
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28280.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 712 0.0
> AT3G28280.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein-related (TAIR:AT3G28330.1); Has
103 Blast hits to 100 proteins in 3 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10540646-10541571
REVERSE LENGTH=837
Length=837
Score = 712 bits (385), Expect = 0.0
Identities = 648/769 (84%), Gaps = 41/769 (5%)
Strand=Plus/Plus
Query 125 GTGGAGTCTCCATATTTCCGTGACTTGTTTCTGTCTATGCA-CCAAACGTCGCATTCTTC 183
||||| |||||||||||||||||| ||||||| ||||| || | |||| ||||||| |||
Sbjct 4 GTGGATTCTCCATATTTCCGTGACCTGTTTCTATCTATTCATCAAAAC-TCGCATTATTC 62
Query 184 ATCATGGTCTCTCTTGTCTTGCTGTTTTGATAAAGAAGTCATAGCTAACTACGAATGCAA 243
||||||||| || ||||| |||| |||| |||||||||||||| |||| | ||||||
Sbjct 63 ATCATGGTCGATCCTGTCTCGCTG---TGATGAAGAAGTCATAGCTCACTATGGATGCAA 119
Query 244 CACTTGGGGACTCGAACGATCTCTCGGC-TCTTACATCTCTTCTTTCGTAACCAAGAAGT 302
||||||||||||| ||||||||||| | || |||||||| |||||| | ||||||||||
Sbjct 120 CACTTGGGGACTCCAACGATCTCTCCACTTC-TACATCTCGTCTTTCCTTACCAAGAAGT 178
Query 303 TTGAGACTTTGAGAAACAAATACAAAGTATGGGCTCACAGTACTGATGTTGGATTAATTT 362
|||| || |||||||| |||||||||||| || ||||||||||||||||| | ||||
Sbjct 179 TTGAAACACAAAGAAACAACTACAAAGTATGGTCTTACAGTACTGATGTTGGAATGATTT 238
Query 363 TGATCAGTGAATTA-TTTTTCAACATGAAGAACCGATCCTTGTACGTGGCTAATCCAGTT 421
||||||||||| | | | || | |||||||||||||||||||||| ||||||||||||
Sbjct 239 TGATCAGTGAA-AACTGTATCTGCGTGAAGAACCGATCCTTGTACGTAGCTAATCCAGTT 297
Query 422 TCACAAGAATGCGTAGAAATCCCTTCTCATCATGCTCATCGT-AGTGAATA-TTTC-TAT 478
||||| ||||||||||| ||||| | || ||||| | ||| | | ||| | | || | |
Sbjct 298 TCACAGGAATGCGTAGAGATCCC-T-TC-TCATGGTTATC-TCA-AGAA-AGTCTCATGT 351
Query 479 CCCTTGGGAATTGCCACACGAAGTGAGAATGGCTTTCTTTTGGATTACAAAGTTGTTTTG 538
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 352 CCCTTGGGAATTGCCACACGAACTGAGAATGGCGTTCTTTTGGATTACAAAGTTGTTTTG 411
Query 539 TTTGAT--ACGC-ACA-----A-AAGCTTGCTGATATATTCATCTAAGACAGGCTTGTGG 589
||| || | || | | | ||| ||||||||||||||||| |||| ||| |||||
Sbjct 412 TTTAATGGAAGCGATACGTTTAGAAGGTTGCTGATATATTCATCCCAGACTGGCATGTGG 471
Query 590 AGTCTCAACACTGTCGATTTGTCTGTGTC-GTGTATTGATTTACGA-TCTACCATTTGCT 647
||| ||||||||||||||||| ||||||| | || || || || | ||| ||||| |||
Sbjct 472 AGTATCAACACTGTCGATTTGACTGTGTCAG-GTTTTCATA-ACCAGTCTCCCATTAGCT 529
Query 648 TGCACGGCAGTATTCACTTGATCGCCACCACTAGTCACGGTGAAGATGTTG-TCGTATCC 706
||||||| |||||||||| |||||||| |||||||||| |||||||||||| | ||||||
Sbjct 530 TGCACGGGAGTATTCACTGGATCGCCAGCACTAGTCACAGTGAAGATGTTGCT-GTATCC 588
Query 707 TTCAATTTATACGCCACTGGTACGAGTTCTGTTCAATGCCGTGTGACTTCTTTCCCAGAT 766
||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 589 TTCGATTTATACGCCACTGGTACGAGCTCTGTTCAATGCCGTGTGACTACTTTCCCTGAT 648
Query 767 TTCGGACAACATCGGCCGAAT--A---GATCTTTCTCAACTTGGCAAGGATCTATCATGT 821
|||||| |||||| || ||| | |||| ||||| ||||| ||||||||| ||||||
Sbjct 649 TTCGGAAAACATC--CCAAATTCACTAGATCGTTCTCCACTTGTCAAGGATCTCTCATGT 706
Query 822 ATATGAACATAATCTCTGTAACTAAAGATGATGGAAGTCTAGAGGATAA 870
||||||| ||||||||| |||| |||| |||||||||||||||| ||||
Sbjct 707 ATATGAATATAATCTCTATAACCAAAGTTGATGGAAGTCTAGAG-ATAA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5