BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936601
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28280.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 745 0.0
> AT3G28280.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein-related (TAIR:AT3G28330.1); Has
103 Blast hits to 100 proteins in 3 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10540646-10541571
REVERSE LENGTH=837
Length=837
Score = 745 bits (403), Expect = 0.0
Identities = 621/722 (86%), Gaps = 31/722 (4%)
Strand=Plus/Plus
Query 40 TCTCCATATTTCCGTGACTTGTTTCGGTCTATGCACCAAAACTCACA-TACGTCATCATG 98
|||||||||||||||||| |||||| ||||| || |||||||| || || ||||||||
Sbjct 10 TCTCCATATTTCCGTGACCTGTTTCTATCTATTCATCAAAACTCGCATTA-TTCATCATG 68
Query 99 GTCGCTCATGTCTGGGAAAGATGGA-GAAGAAGTCGTAGCTCACTACGGATGCAACACTT 157
|||| || ||||| | | | || ||||||||| |||||||||| |||||||||||||
Sbjct 69 GTCGATCCTGTCT-CG-CTG-T-GATGAAGAAGTCATAGCTCACTATGGATGCAACACTT 124
Query 158 GGGGACTCGAACAATCTCTAGGC-TCTTACATCTCGTCTTTCCTAACCAAGATGTTTGAG 216
|||||||| ||| |||||| | || ||||||||||||||||| ||||||| ||||||
Sbjct 125 GGGGACTCCAACGATCTCTCCACTTC-TACATCTCGTCTTTCCTTACCAAGAAGTTTGAA 183
Query 217 ACTGaaaaaaaCAAATACATTGTATGGGCTTACA--AC-GACGTCGGATTGATTTTGATC 273
|| ||| |||||| |||| |||||| |||||| || || || ||| |||||||||||
Sbjct 184 ACACAAAGAAACAACTACAAAGTATGGTCTTACAGTACTGATGTTGGAATGATTTTGATC 243
Query 274 AGTGAACTCCCTATCTGGGTGACGAACCGATCATTGTACGTGGCTAATCCAGTTTCACAG 333
|||||| | |||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 244 AGTGAAAACTGTATCTGCGTGAAGAACCGATCCTTGTACGTAGCTAATCCAGTTTCACAG 303
Query 334 GAATGCGTAGAGATCCCGTCTCATGCTCATCTCAAGGAAGTCTCCTGTCCCTTGGGAATT 393
||||||||||||||||| ||||||| | |||||||| ||||||| |||||||||||||||
Sbjct 304 GAATGCGTAGAGATCCCTTCTCATGGTTATCTCAAGAAAGTCTCATGTCCCTTGGGAATT 363
Query 394 GCCACACGAACTGAGAATGGCATTCTTTTGGATTACAGAGTTGTTCTGTTTGACG-A-G- 450
||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | | | |
Sbjct 364 GCCACACGAACTGAGAATGGCGTTCTTTTGGATTACAAAGTTGTTTTGTTTAATGGAAGC 423
Query 451 GA--C-TTGAGA---TTGCTGATATATTCATCACATACAGGCTTGTGGAGTCTCAACACT 504
|| | || ||| ||||||||||||||||| || || ||| |||||||| ||||||||
Sbjct 424 GATACGTTTAGAAGGTTGCTGATATATTCATCCCAGACTGGCATGTGGAGTATCAACACT 483
Query 505 GTGGATTCTTATCCT-T-T-AGCTTTGT-ATACACAA-TCTCCCATTAGCTTGCACGGGA 559
|| |||| | | | | | | || ||| | ||| || | ||||||||||||||||||||||
Sbjct 484 GTCGATT-TGA-C-TGTGTCAGGTTT-TCATA-ACCAGTCTCCCATTAGCTTGCACGGGA 538
Query 560 GTATTCATTGGATCGCCAGCACTAGTCACAGTGTAGATGTTGTTGTATCCATCGATTTAT 619
||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 539 GTATTCACTGGATCGCCAGCACTAGTCACAGTGAAGATGTTGCTGTATCCTTCGATTTAT 598
Query 620 ACGCCACTGGTACGAGCTCTGTTCAATGCCGTGTGACTTCTTTCCCTGATTTCGGACAAC 679
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 599 ACGCCACTGGTACGAGCTCTGTTCAATGCCGTGTGACTACTTTCCCTGATTTCGGAAAAC 658
Query 680 ATCCCAAATTCAATAGATCTTTCTCAACTTGTCAAGGATCTCTCATGTATATGAACATAA 739
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 659 ATCCCAAATTCACTAGATCGTTCTCCACTTGTCAAGGATCTCTCATGTATATGAATATAA 718
Query 740 TC 741
||
Sbjct 719 TC 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5