BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936602
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28330.1 | Symbols: | F-box family protein-related | chr3:1... 1467 0.0
AT3G28223.1 | Symbols: | F-box family protein | chr3:10527477-... 143 4e-33
> AT3G28330.1 | Symbols: | F-box family protein-related | chr3:10586566-10587712
REVERSE LENGTH=1050
Length=1050
Score = 1467 bits (794), Expect = 0.0
Identities = 966/1047 (92%), Gaps = 19/1047 (2%)
Strand=Plus/Plus
Query 23 ATGGGAGCTTATACTTGCGAGATTACCACTAAAAAGCATCATCACCACTCCAAAATTGGT 82
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1 ATGGGAGATTATACTTGCGAGATTACCACTAAAGAGCATCATCACCACTCCAAAACTGGT 60
Query 83 TT---AGGTTGTGAGACAGAGATCATGTCTCACTATGGATCAGACAACTGGAATCTTAAA 139
|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 61 TTGCAAGGTTGTGAGACAGAGATCATGTCTCACTATGGATCTGACAATTGGAATCTTAAC 120
Query 140 CATTCTCTCGGTTCTTACATTTCTTCTTTCCTAACCAACAAATTCGAGAACTATAATGAA 199
||||||||||||| |||||| ||||| ||||| ||| |||||||||||||||||||||||
Sbjct 121 CATTCTCTCGGTTATTACATCTCTTCCTTCCTTACCGACAAATTCGAGAACTATAATGAA 180
Query 200 GCTAGAGTCGTGTCTTACACGGATGTTGGATTGATATTGATTCATCGAGTGTCGAA-TCA 258
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 181 GCTAGAGTCGTGTCTTACACGGATGTTGGATTGATATTGGTTCATCGAGTGTC-AAGTCA 239
Query 259 ATCTTTCTACGTTGCTAATCCTGTTTCTAGGCAATGCGTTGAGATTCTTCCTTTAGCTTC 318
||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 240 GTCTTTCTACGTAGCTAATCCTGTTTCTAGGCAATGCGTAGAGATTCTT-C-----CTTC 293
Query 319 ACAGAAACAGGAACGTTTATGGATTTTGGGAATAGCCACAAGAGTTGAGAACGGCGTCGT 378
|||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 294 ACAGAAACTGGATTGTTTCTGGATTTTGGGAATAGCTACAAGAGTTGAGAATGGCGTCGT 353
Query 379 TTTAGGTTACAAAGTTGTTCTGTTGAAACCTAACTTCACTTTCCTCATATATTCATCTGA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TTTAGGTTACAAAGTTGTTCTGTTGAAACCTAACTTCACTTTCCTCATATATTCATCTGA 413
Query 439 GACAGGATTCTGCTTGTGGAGTCTCAACAGTGCCAATTTTCCTTTCA-CTTATATATCTC 497
|||||| || | ||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 414 GACAGG---CT--T-GTGGAGTCTCAACAGTGACACTTTTCCTTTCAGCT-ATATATCTC 466
Query 498 AGGAGTTTAACAATCCTATTAGCTTGAACGGAAGTCTTCACTGGCTAGCTCACGGTTCCA 557
| |||||||||||||| ||||||||||||||||||||| ||||||| || |||||||||
Sbjct 467 AAGAGTTTAACAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCCCACGGTTCCG 526
Query 558 ACTATCAAGATTTCGTTGTATCCATCAACTTCTACGCTATTGATAGCCGGTCTGATCGAT 617
| |||||||||||| ||||||||||| | ||||| | | |||||||||| ||||||||||
Sbjct 527 AGTATCAAGATTTCATTGTATCCATCGATTTCTATGTTGTTGATAGCCGCTCTGATCGAT 586
Query 618 GTCGTGCTACGCAATTTCCTGATTTAGATAAAGTTCCTAAATTCAGAAGAACTTGCACAA 677
| || ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 587 GCCGCGCTACGCCATTTCCTGATTTAGATAAAGTTCCGAAATTCAGAAGAACTTGCACAA 646
Query 678 CTTCTCAAGGATATCTCATGTATATGAATATATTCTCTATACCAAAAGTTGATGGAAATT 737
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 647 CTTCTCAAGGATGTCTCATGTATATGAACATATTCTCTATACCAAAAGTTGATGGTAATT 706
Query 738 TAGAGGATAAGTTATGTGTATGGAGGCTAGAAAGCTGGCAATGGCGACTAGTATCCGAAA 797
||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 707 TAGAGGACAAGTTATGTGTATGGAGGCTAGAGAGCTGGCAATGGCGACTAGTATTCGAAA 766
Query 798 TCTCATTGGATTCTATTAAGACCGGTTTCGATTATATTCCGTTGGGAATAAACCCTTTTG 857
| || ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 767 TATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTCCGTTGGGAACAGACCCTTTTG 826
Query 858 ATGCTAAAACAGTCTACCTTTGGAGTCACAAATGTTTGTTATCTATCAACTTACACAATG 917
||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 827 ATGCTAAAACAGTCTACCTTTGGAGTCGCAAATGCTTGTTATCTATTAACTTACACAATG 886
Query 918 GAGACTTTGTGCTCCACAAGGATATGGAACGTAGCAGCGAGGGTCGCATTCTGAATTCCG 977
||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 887 GAGACATTGTGCTCCACAAGGATGTGGAACATAGCAGCGCGGGTCGCATTCTGAATTCCG 946
Query 978 TTGATTGCCCGAGAGATATGAAATACATCTTAGAATCAAATTTTGCCTCGTTCGTTCTCC 1037
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 947 TTGATTGCCCGAGAGATATGACATACATCTTAGAATCAAACTTTGCCTCGTTCGTTCTCC 1006
Query 1038 CACAGTGGATGCATCCGTTCCCGAGCA 1064
|||||||||||||||||||||| ||||
Sbjct 1007 CACAGTGGATGCATCCGTTCCCTAGCA 1033
> AT3G28223.1 | Symbols: | F-box family protein | chr3:10527477-10528961
REVERSE LENGTH=1408
Length=1408
Score = 143 bits (77), Expect = 4e-33
Identities = 169/211 (80%), Gaps = 16/211 (8%)
Strand=Plus/Plus
Query 662 AGAAGAACTTGCACAACTTCTCAAGGATATCTCATGTATATGAATATATTCTCTAT-ACC 720
|||||| ||| |||||| || ||||||| ||| ||||||||||| | ||| || || |
Sbjct 752 AGAAGAGCTTTCACAACATCCCAAGGATCTCTTATGTATATGAA-A-ATTATCAATGAAG 809
Query 721 AAAA-GTTGATGGAAATTTAGAGGAT-AAGTTATGTGTATGGAGGCTAGAA-AGCTGGCA 777
|||| | |||||||| ||||| || | |||||||||||||||||| || || || ||| |
Sbjct 810 AAAAAGATGATGGAAGTTTAG-GGCTTAAGTTATGTGTATGGAGGTTA-AAGAG-TGGGA 866
Query 778 A-TGGCGAC-TAGTATCCGAAATCTCATT-GGATTCTATTAAGACCGGTTTCGATTA-TA 833
| ||| || ||||||| ||||| || | || || ||| |||| ||||| ||||| |
Sbjct 867 AATGG-GAAATAGTATCTGAAATATC-TCCGGCTTGTATCAAGAGTGGTTTAGATTACT- 923
Query 834 TTCCGTTGGGAATAAACCCTTTTGATGCTAA 864
||||||||| |||||||||||||||||||||
Sbjct 924 TTCCGTTGGCAATAAACCCTTTTGATGCTAA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5