BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936606
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28340.1 | Symbols: GATL10 | galacturonosyltransferase-like ... 1796 0.0
> AT3G28340.1 | Symbols: GATL10 | galacturonosyltransferase-like
10 | chr3:10588947-10590552 REVERSE LENGTH=1606
Length=1606
Score = 1796 bits (972), Expect = 0.0
Identities = 1087/1143 (95%), Gaps = 6/1143 (1%)
Strand=Plus/Plus
Query 1 TCTTAGCCATTAAGTTCTC-TAATGATGTCTAGTTCAAGATTAGTCTCTAGAC---TAAT 56
||||||||||||||||||| | ||||||||| |||||||||||| |||||||| ||||
Sbjct 38 TCTTAGCCATTAAGTTCTCTTGATGATGTCTGGTTCAAGATTAGCCTCTAGACTAATAAT 97
Query 57 AATCTTCTCAATAATCTCCACAGCTTTCTTCAGCGTTGAATCGATTCGATTATTCCCAGA 116
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||
Sbjct 98 AATCTTCTCAATAATCTCCACATCTTTCTTCACCGTTGAATCGATTCGACTATTCCCTGA 157
Query 117 TTCATTCGACGATGCATCTTCAGATTTCACGGAGGCTCCAGCATATCAAAACGGTCTTGA 176
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 158 TTCATTCGACGATGCATCTTCAGATTTAATGGAAGCTCCAGCATATCAAAACGGTCTTGA 217
Query 177 ATGCTCTGTTTTAGCGAAAAACAGACTCTTGTTAGCTTGTGATCCATCAGCTGTTCATAT 236
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 TTGCTCTGTTTTAGCCAAAAACAGACTCTTGTTAGCTTGTGATCCATCAGCTGTTCATAT 277
Query 237 AGCTATGACTCTTGATCCAGCTTACTTGCGTGGCACGGTATCTGCAGTCCATTCGATTCT 296
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 278 AGCTATGACTCTAGATCCAGCTTACTTGCGTGGCACGGTATCTGCAGTACATTCCATCCT 337
Query 297 CAAACACACTTCTTGCCCTCAAAACATCTTCTTCCACTTCATTGCTTCGGGTTCAAGTCA 356
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 338 CAAACACACTTCTTGCCCTGAAAACATCTTCTTCCACTTCATTGCTTCGGGTACAAGTCA 397
Query 357 CGGTTCGCTCGTTAAGACTCTCTCCTCTGTTTTTCCTTCTTTGAGTTTCAAAGTCTATAC 416
||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 398 GGGTTCCCTCGCCAAGACCCTATCCTCTGTTTTTCCTTCTTTGAGTTTCAAAGTCTATAC 457
Query 417 CTTTGATGAAACCATGGTCAAGAATCTAATCTCTTCTTCTATAAGACAAGCTCTTGATAG 476
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CTTTGAAGAAACCACGGTCAAGAATCTAATCTCTTCTTCTATAAGACAAGCTCTTGATAG 517
Query 477 TCCTTTGAATTATGCAAGAAGCTACTTGTCGGAGATTCTTTCTTCGTGTGTTAGTCGAGT 536
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 518 TCCTTTGAATTACGCAAGAAGCTACTTATCCGAGATTCTTTCTTCGTGTGTTAGTCGAGT 577
Query 537 GATTTATCTCGATTCGGATGTGATTGTAGTCGATGATATTCAGAAACTATGGAAGATTTC 596
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 578 GATTTATCTCGATTCGGATGTGATTGTGGTCGATGATATTCAGAAACTATGGAAGATTTC 637
Query 597 TTTATCTGGATCAAGAACAATCGGTGCACCAGAGTATTGCCACGCAAATTTCACCAAATA 656
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTTATCCGGGTCAAGAACAATCGGTGCACCAGAGTATTGCCACGCAAATTTCACCAAATA 697
Query 657 CTTCACAGAGAGTTTCTGGTCCGATCGAAAACTCTCGAGTGTCTTCGATTCGAAAACTCC 716
||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 698 CTTCACAGATAGTTTCTGGTCCGATCAAAAACTCTCGAGTGTCTTCGATTCCAAGACTCC 757
Query 717 TTGTTATTTCAACACCGGAGTGATGGTTATCGATTTAGATAGATGGAGAGAAGGAGATTA 776
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 758 TTGTTATTTCAACACAGGAGTGATGGTTATCGATTTAGAGCGATGGAGAGAAGGAGATTA 817
Query 777 TACGCGAAAGATCGAAAATTGGATGAAGATTCA-AAAGGAAGATAAAAGAATCTATGAAT 835
||| ||||||||||||| |||||||||||||| ||| |||||||| |||||||| ||||
Sbjct 818 CACGAGAAAGATCGAAAACTGGATGAAGATTCAGAAA-GAAGATAAGAGAATCTACGAAT 876
Query 836 TGGGTTCTTTGCCACCGTTTCTTTTAGTGTTTGGTGGTGATATTGAAGCTATTGATCATC 895
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 877 TGGGTTCTTTACCACCGTTTCTTCTAGTGTTTGGTGGTGATATTGAAGCTATTGATCATC 936
Query 896 AATGGAACCAGCACGGTCTCGGTGGAGACAACATTGTGAGTAGTTGTAGATCTTTGCATC 955
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AATGGAACCAACACGGTCTCGGTGGAGACAACATTGTGAGTAGTTGTAGATCTTTGCATC 996
Query 956 CTGGTCCGGTTAGTTTGATACATTGGAGTGGAAAAGGGAAGCCATGGGTTAGGCTTGATG 1015
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 997 CTGGTCCGGTTAGTTTGATACATTGGAGTGGTAAAGGGAAGCCATGGGTTAGGCTTGATG 1056
Query 1016 ATGGTAAGCCTTGTCCAATTGATTATCTTTGGGCTCCTTATGATCTTCACAAGTCACAGA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ATGGTAAGCCTTGTCCAATTGATTATCTTTGGGCTCCTTATGATCTTCACAAGTCACAGA 1116
Query 1076 GACAGTATCTTCAATACAATCAAGAGTTAGAAATTCTTTGATTTATTCAtttttttGGGT 1135
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1117 GGCAGTATCTTCAATACAATCAAGAGTTAGAAATTCTTTGATTTATTCATTTTTTGGGGT 1176
Query 1136 TTT 1138
|||
Sbjct 1177 TTT 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5