BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936615
Length=2550
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 4172 0.0
> AT3G28430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 6 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155);
Has 243 Blast hits to 233 proteins in 101 species: Archae
- 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53;
Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:10657031-10662766
REVERSE LENGTH=3286
Length=3286
Score = 4172 bits (2259), Expect = 0.0
Identities = 2456/2552 (96%), Gaps = 9/2552 (0%)
Strand=Plus/Plus
Query 1 AGGATTGATTTTTAACAATCATGTGGCTTTCCTTCTTAAGACCCAGAGATCGATTCTCCT 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGGATTGA-TTTAAACAATCATGTGGCTTTCCTTCTTAAGACCCAGAGATCGATTCTCCT 402
Query 61 TAGCCGAACTCAGGTATCTGACTGACCAGCTGAGAAAGATTCAGATAGTGAACGATGCTA 120
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 403 TAGCCGAACTCAGGTATTTGACTGACCAGCTGAGAAAGATTCAGATAGTAAACGAGGCTA 462
Query 121 ATAAGGATCTCGTTGTCGAGGCACTGAGATCGATTGCGGAGATATTAACTTATGGTGATC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 463 ATAAGGATCTCGTTATCGAGGCACTGAGATCGATTGCGGAGATATTAACTTATGGGGATC 522
Query 181 AGCATGACCCCTTATTCTTTGAATTTTTTATGGAGAAACAAGTAATGGGAGAGTTTGTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGCATGACCCCTTATTCTTTGAATTTTTTATGGAGAAACAAGTAATGGGAGAGTTTGTAC 582
Query 241 GTATTTTGAGGGTTAGCAAGACGGTAACAGTTTCCGTACAGTTGTTGCAAACCATGAGTA 300
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 583 GTATTTTGAGGGTTAGCAAGACAGTAACAGTTTCTGTCCAGTTGTTGCAAACCATGAGTA 642
Query 301 TTATGATCCAAAACCTAAAAAGTGAACAAGCCATCTATTACTTGTTCAGTAACGAATATG 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TAATGATCCAAAACCTAAAAAGTGAACAAGCCATCTATTACTTGTTCAGTAACGAATATG 702
Query 361 TAAACTATTTGATAACATATACATTTGACTTCCAACACGAAGAGCTTCTATCTTACTACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TAAACTATTTGATAACATATACATTTGACTTCCAACACGAAGAGCTTCTATCTTACTACA 762
Query 421 TATCCTTCTTAAGAGCTGTTAGTGGGAAGCTAAACAAGCATACAATATCATTGCTTTTGA 480
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 763 TATCCTTCTTAAGAGCTGTTAGTGGGAAGCTGAACAAGCATACAATATCGTTGCTTTTGA 822
Query 481 AGACCGAGAACGATGTAGTAGTTTCTTTCCCCCTTTATGTCGAAGGCATACAATTTGCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGACCGAGAACGATGTAGTAGTTTCTTTCCCCCTTTATGTCGAAGGCATACAATTTGCAT 882
Query 541 TTCATGAAGAGAACATGATACGCACTGCAGTTCGTGCCCTGACTCTTAATGTATATCACG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TTCATGAAGAGAACATGATACGCACTGCAGTTCGTGCCCTGACTCTTAATGTATATCACG 942
Query 601 TTGGCGATGAATCTGTGAATGATTATGTAGTTAGTCCACCGCACACCGAGTACTTTTCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TTGGCGATGAATCTGTGAATGATTATGTAGTTAGTCCACCGCACACCGAGTACTTTTCAA 1002
Query 661 AATTAATTTCATTTTTCCAAAAGCAATGCATGGATCTAAGTGCAATGGTGTTGAACACTC 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1003 AATTAATTTCATTTTTCCAAAAGCAATGCATGGATCTAAGTGCAATGGTCTTGAACACTC 1062
Query 721 TAAAGAGCCCATCTCCGGATTCAGGTGGAAAATTGTTTTCTGCCGTTGATGGGATTGAGG 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TAAAAAGCCCATCTCCGGATTCAGGTGGAAAATTGTTTTCTGCCGTTGATGGGATTGAGG 1122
Query 781 ACACCTTGTACTACTTTAGTGATGTTATCTCTGCTGGCATACCTGACATCGGGAGGCTGA 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1123 ACACCTTGTACTACTTTAGTGATGTTATCTCTGCTGGCATACCTGATATCGGGAGGCTGA 1182
Query 841 TAACAGATCACATTCTGCAGCATCTAACTCTCCCACTTCTTCTCCCGTCTTTATGCTCCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TAACAGATCACATTCTGCAGCATCTAACTCTCCCACTTCTTCTCCCGTCTTTATGCTCCG 1242
Query 901 AGGCTGTAAATGATATGTCAGTTGATCCTGTCACTTCTCTCTACCTGCTTTCTTGCATCC 960
||||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 1243 AGGCTGTAAATGACATATCAGTTGATCCTGTCACTTCTCTTTATCTGCTTTCATGCATCC 1302
Query 961 TGCGGATAGTTAAAATTAAAGATTTGGCAAATATGACTGCTGCTACTCTTTTCTGCCCTG 1020
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TGCGGATAGTTAAAATCAAAGATTTGGCAAATATGACTGCTGCTACTCTTTTCTGCCCTG 1362
Query 1021 TAAAAGCATTCATTTCAAGTTCCCTGGTGAAACCTAATAACAGCTTGGCTCCTGAACTCC 1080
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct 1363 TAAAAGCATTCATTTCAAGTTCCCTAGTGAAACCTAATAGCAGCTTGGCTCCTGAAGGCC 1422
Query 1081 TTACATATGGAAATGGGCATCCAGACAAGGGTGTTGCTGAGGAGGCAGATCAACAGTGTT 1140
||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1423 TTACATATGTAAATGGGCATCCAGACAAGGGTGTTACTGAGGAGGCAAATCAACAGTGTT 1482
Query 1141 CAAGCACT---GCAGTCATGAGTGAGGATGGAAAGTCTCACGTT-TGCAGTGAAAATACT 1196
|||||||| |||| ||||||||| |||||||| || ||| || ||||||||| |||||
Sbjct 1483 CAAGCACTGCGGCAGGCATGAGTGACGATGGAAATTCCCAC-TTATGCAGTGAAGATACT 1541
Query 1197 CCGAAAAGTATCTTCAACAATTCTCATATGACGTTTAGGGAGACTTTACTTCAGTATATT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1542 CCGAAAAGTATCTTCAACAATTCTCATATGACGTTTAGGGAGACTTTACTTCAATATATT 1601
Query 1257 TCTGAGGGAGATGATGTACAAGCTCAGGGTTCCTTGTTTGTGCTAGCCACTTTGCTGCAG 1316
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1602 TCTGAAGGAGATGATGTACAAGCTCAGGGTTCCTTGTTTGTGCTAGCCACTCTGCTGCAG 1661
Query 1317 ACAAAAGAACTTGAAGAGTCAATGCTAGATGCTTTTGGTATTCTTCCTCAGCGTAAGCAG 1376
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1662 ACAAAAGAACTTGAAGAGTCAATGCTAGATGCTTTTGGCATTCTTCCTCAGCGTAAGCAG 1721
Query 1377 CACAAAAAACTTTTGCTGCAATCTTTGGTTGGGGAGGACACTGGTGAAGAACAACTTTTT 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1722 CACAAAAAACTTTTGCTGCAATCTTTGGTTGGGGAGGACACTGGTGAAGAACAACTATTT 1781
Query 1437 TCACCGCGAAATGGTTCAATGAGAGATGGCTTAAGTAGTGAACTTGATTGGTATCTACGG 1496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 TCACCGCGAAATGGTTCCATGAGAGATGGCTTAAGTAGTGAACTTGATTGGTATCTACGG 1841
Query 1497 AGGTTGGAGGAGCAGTTTGGAGTGTGCTGTTCATTGCCTGGGGCTGCAAGGTGCCCCCGT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AGGTTGGAGGAGCAGTTTGGAGTGTGCTGTTCATTGCCTGGGGCTGCAAGGTGCCCCCGT 1901
Query 1557 GTACATAGACATCAGGTGGTGGATACATTGGTCACTCTTCTCTGCCGAGAAAACATATCT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 GTACATAGACATCAGGTGGTGGATACATTGGTCACTCTTCTCTGCCGAGAAAACATATCT 1961
Query 1617 GCAGAAACATTATGGGATGGAGGATGGCTTTTACGCCAATTGCTTCCTTATAGCGAGGCA 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1962 GCAGAAACATTATGGGATGGAGGATGGCTTTTACGCCAATTGCTTCCTTATAGTGAGGCA 2021
Query 1677 GAATTTAATCGCAAACATCTCAAGATGCTGAATGTTTCGTATGAGAAATGCAAAAGTGCC 1736
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 2022 GAATTTAATCGTAAACATCTCAAGATGCTGAATGTTTCGTATGAGAAATGCAAAAATTCC 2081
Query 1737 CTTACCCGGGAAATTAAAGGTACCTGGCCTGATCTACTTATCACAGTACTGCTTGATGAG 1796
|||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 2082 CTTACCAGGGAAATTAAAGGTATCTGGCCTGATCTACTCATCAGGGTACTGCTTGATGAG 2141
Query 1797 TGGAGAAAGTGCAAAAGAGTAATCGAAGCTCCATCCCCTCAAAAAGAGCCTAAATCTGTT 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 TGGAGAAAGTGCAAAAGAGTAATCGAAGCTCCATCCCCTCAAAAAGAGCCTAAATCTGTT 2201
Query 1857 CTTCTCCAGCTGGATAGATCCTCTTCTAATGATG-CT--GTTAGCGAATCATCATTCACA 1913
||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2202 CTTCTTCAGCTGGATAGATCCTCTTCTAATGATAACTCTGTTAGCGAATCATCATTCACA 2261
Query 1914 GCTGGTGAAAGAATGTGCGAGGTGGTAAAGGTTTTCGTGCTTCTTCATCAACTCCAAATT 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 GCTGGTGAAAGAATGTGCGAGGTGGTAAAGGTTTTCGTGCTTCTTCATCAACTCCAAATT 2321
Query 1974 TTCTCGCTCGGTAGGCCCTTACCCGAGCAGCCTCCGATTCACCCTCCAGCCAACCGATCT 2033
||||||||||||||| |||||||||||||||| || ||| | ||||||||| ||||||||
Sbjct 2322 TTCTCGCTCGGTAGGTCCTTACCCGAGCAGCCGCCTATTTATCCTCCAGCCGACCGATCT 2381
Query 2034 GAAACGTCTCGTGCCACAATTGCTGGTTTGGATGTTTCAGTCCCCAAACCTGGCACCGAA 2093
||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 2382 GAAACTTCTCGTGCCACAAGAGCTGGTCTGGATGTATCAGTCCCCAAACCTGGCACCGAA 2441
Query 2094 CTGAAGCTAGTTGATGCTGTACCCTGTAGGATTGCCTTTGAAAGAGGCAAGGAACGTGAT 2153
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2442 CTGAAGCTAGTTGATGCTGTACCCTGTAGGATTGCCTTTGAAAGAGGCAAGGAACGAGAT 2501
Query 2154 TTCTCGTTTCTAGCATTATCATCTGGTGAGTCTGGGTGGATTGTCCTTGCTGATCCAGAT 2213
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2502 TTCTCATTTCTAGCATTATCATCCGGTGAGTCTGGATGGATTGTCCTTGCTGATCCAGAT 2561
Query 2214 AACGGAATCGTCCGTGTAACCGCACCTTTAGCCGGCTGCAAACCCCGAATTGACGAAAAG 2273
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 2562 AATGGAATCGTCCGTGTAACGGCACCTTTAGCCGGCTGCAAACCCCGAATAGATGAAAAG 2621
Query 2274 CACCCCAAATGGCTACACTTGAGAATTCGACCATCTACATTACCGTTGTTGGATCCAACA 2333
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2622 CACCCGAGATGGCTACACTTGAGAATCCGACCATCTACATTACCGTTGTTGGATCCAACA 2681
Query 2334 AAGCGAGGAGTCTATGAGAAGCTCATGTCTAAAGGTCTAGTAGACGGGAGATGGATATTA 2393
||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 2682 AAGCGAGGAGTCTATGAGAAGCTCAAGTCCAAAGGTCTAGTAGATGGGAGATGGATATTA 2741
Query 2394 GCATTCAGGGATGATGAATCTTGCCTCTCTGCTTACTCAATGGTTGCAGGTGAGATCGAT 2453
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2742 GCATTCAGGGACGATGAATCTTGCCACTCTGCTTACTCAATGGTTGCAGGTGAGATCGAT 2801
Query 2454 CAACAATGCAGCGAGGTAGAACGAAGACTAAGGCCATTGTTTGACCTAGAACGAAACCAA 2513
| ||||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||
Sbjct 2802 CTACAATGCAGCGAGGTAGAAAGAAGGTTAAGGCCATTGTTTGACCTTGAAAGAAACCAG 2861
Query 2514 CAAGAAGATCAATGAAACATCACACTTCCGAT 2545
| |||||||||||||||||||| ||| |||||
Sbjct 2862 CTAGAAGATCAATGAAACATCATACTGCCGAT 2893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126571197189
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5