BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936621
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28460.1 | Symbols: | methyltransferases | chr3:10672041-10... 1476 0.0
> AT3G28460.1 | Symbols: | methyltransferases | chr3:10672041-10674395
REVERSE LENGTH=1503
Length=1503
Score = 1476 bits (799), Expect = 0.0
Identities = 923/981 (94%), Gaps = 16/981 (2%)
Strand=Plus/Plus
Query 1 AGTCGAAAACTTTTTTAGCTATGGCGATTTTG-T-T-ATC-ATCT-TCCA-TA-GTCTCT 53
||||||||||||| | ||| |||||| ||||| | | ||| ||| |||| || | ||
Sbjct 79 AGTCGAAAACTTTATCAGCAATGGCGGTTTTGTTGTCATCTTTCTCTCCACTAGGAATCA 138
Query 54 CCACTAGGA-ATCAATAAGAATTTGGGTGTCTCGTATTCTTCTTTCCCTCAAATTCA-CA 111
|| | || || ||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 139 ACA-T-TGACATGAATAAGAATCTGGGTGTTTCGTATTCTTCTTTCCCTCAAATTCATC- 195
Query 112 TC-TTCAGGGTTTCTACTCCACTGCGTATTCGAA-AATCTGTCGTCTCGAGCCGTAAAAA 169
|| || |||| |||||||||||||||| |||||| | || ||||||||||| ||||||||
Sbjct 196 TCTTTAAGGG-TTCTACTCCACTGCGTGTTCGAACATTC-GTCGTCTCGAGTCGTAAAAA 253
Query 170 TTCAGGAACTGGTTTAGCAAGCGAGGATAAGAAATTGTTGTTGGAACGATATGGTTATGA 229
||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 254 TTCAGGAACTGGTTTGGCAAGTGAGGATAAGAAATTGTTGCTGGAACGATATGGTTATGA 313
Query 230 TGCTAATGATGACTTTGGGTCTCAAACTAAGAAGGCGAGAAGGAAAGAAGAGAAAATGAG 289
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 314 TGCTAATGATGACTTTGGGTCTCAATCTAAGAAGGCGAGAAGGAAAGAAGAGAAAATGAG 373
Query 290 TGGAAGGAATAGTCAACAAGTGGAAGAAGTTGTTGTTGTACAGCCAAGAACAACTCATAG 349
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGGAAGGAATAGTCAACAAGTAGAAGAAGTTGTTGTTGTACAGCCAAGAACAACTCATAG 433
Query 350 GTTACTTCAGGTTCTTGCAGGAACGGCGAAACGAAAGAAATTGCTTTCTCTTAAGGGAAT 409
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GTTACTGCAGGTTCTTGCAGGAACGGCGAAACGAAAGAAATTGCTTTCTCTTAAGGGAAT 493
Query 410 GGATGTGAGACCTATGATGGAAGTTGTTAAAGGAGCTGCTTTTGGAATTCTCCAGGCTGC 469
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 494 GGATGTGAGACCTATGATGGAAGTTGTTAAAGGAGCAGCTTTTGGAATTCTCCAGGCTGC 553
Query 470 TGGTGGTTGTCCAACGTCTCTGCGTCCTGGTAGGTGGTTGGATTTGTATAGTGGTACAGG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TGGTGGTTGTCCAACGTCTCTGCGTCCTGGTAGGTGGTTGGATTTGTATAGTGGTACAGG 613
Query 530 GTCTGTTGGAATTGAAGCAATAAGTCGAGGATGTTCGGAGGCACATTTTGTTGAGATGGA 589
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 614 GTCTGTTGGGATTGAAGCAATCAGTCGAGGATGTTCTGAGGCACATTTTGTTGAGATGGA 673
Query 590 TCCTTGGGTTGTGACAAATGTTCTACAACCAAACTTGGAACACACTGGGTTTGTTGATGC 649
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TCCTTGGGTTGTTTCAAATGTTCTACAACCAAACTTGGAACACACTGGGTTTGTTGATGC 733
Query 650 TTCGGTTATCCACACTGCTCGAGTTGAAAACTTCTTGGAACGTGCTGATAAATTAGTAGG 709
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 734 TTCGGTTATACACACTGCTCGAGTTGAAAACTTCCTGGAACGTGCTGATAAATTAGTAGG 793
Query 710 TAAGGATGGAGCGTTTGATTATATCAGCGTTACCCCACCTTACATGGAGGTTGACTATGA 769
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 794 TAAGGATGGAGTGTTTGATTATATCAGCGTTACGCCACCTTACATGGAGGTTGATTATGA 853
Query 770 GGTTCTGATGGATCAGATTGCTAAGTCGCCAGCAATTGGGGAAAATACATTTATTGTGGT 829
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||
Sbjct 854 GGTTCTGATGGATCAGATTGCTAAGTCACCAGCGATTGGGGAAAATACTTTTATTTTGGT 913
Query 830 CGAGTACCCTTCACGAACAACAATGCTTGATTCATGTGGATGCCTTGAAAAGATGACTGA 889
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CGAGTACCCATCACGAACAACAATGCTTGATTCATGTGGATGCCTTGAAAAGATGACTGA 973
Query 890 TCGAAGGTTTGGCCGGACACATCTGGCCATATATGGACCAAAATGGGCTCAGAAGCCAAG 949
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 974 TAGAAGGTTTGGCCGGACACATCTAGCTATATATGGACCAAAATGGGCTCAGAAGCCAAG 1033
Query 950 AAAATCTTAAAGCCACAGTGA 970
|||||||||||||||||||||
Sbjct 1034 AAAATCTTAAAGCCACAGTGA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5