BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936631

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61530.1 | Symbols:  | small G protein family protein / RhoG...   486    1e-136


> AT5G61530.1 | Symbols:  | small G protein family protein / RhoGAP 
family protein | chr5:24742048-24744784 FORWARD LENGTH=1569
Length=1569

 Score =  486 bits (263),  Expect = 1e-136
 Identities = 299/316 (95%), Gaps = 4/316 (1%)
 Strand=Plus/Plus

Query  62   CAGCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACC  121
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  433  CAGCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACC  492

Query  122  GGGACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTATGTTGGAAAGATC  181
            ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  493  GGGACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATC  552

Query  182  AAAATGGAAGAGGCAGCCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATC  241
            ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  553  AAAGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATC  612

Query  242  GAAAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTT-CTGATTGAGATCAT  300
            ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| 
Sbjct  613  GAAAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGC-GATTGAGATCAC  671

Query  301  TGTCCAGCGGCAAGAGTCAAGCAGGCCTATACCACTGATACT-GATTAAATGCGCAGATT  359
            |||||||||||| ||||||||||||||||| || |||||||| | |||||||||||||||
Sbjct  672  TGTCCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACTAG-TTAAATGCGCAGATT  730

Query  360  ATCTCATATTAACAGG  375
            ||||||||||||||||
Sbjct  731  ATCTCATATTAACAGG  746


 Score =  139 bits (75),  Expect = 3e-32
 Identities = 83/87 (95%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  458  TTACCAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGATTCAA  517
            ||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct  739  TTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGATTCAA  798

Query  518  CAATTGGTTTCTGCTTACAATCAAGAT  544
            |||||||||||||||||||||||||||
Sbjct  799  CAATTGGTTTCTGCTTACAATCAAGAT  825


 Score =  135 bits (73),  Expect = 4e-31
 Identities = 81/85 (95%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  582  ATCCTAGTGCGTCAATACCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCATGAAAT  641
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  824  ATCCTAGGGCGTCAATACCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCTTGAAAT  883

Query  642  ACTATCTTGCCACCCTTCCGACACC  666
            |||||||||| | ||||||||||||
Sbjct  884  ACTATCTTGCTAGCCTTCCGACACC  908



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34008517519


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5