BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936643
Length=356
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28600.1 | Symbols: | P-loop containing nucleoside triphosp... 468 2e-131
AT3G28610.1 | Symbols: | P-loop containing nucleoside triphosp... 342 1e-93
> AT3G28600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:10722437-10723995
FORWARD LENGTH=1559
Length=1559
Score = 468 bits (253), Expect = 2e-131
Identities = 311/339 (92%), Gaps = 4/339 (1%)
Strand=Plus/Plus
Query 1 CTTTGATCAGGAGAGGGAGAATGGACATGCATATTGAGTTGTCTTACTGTACTTTCGAGG 60
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1100 CTTTGATCAGGAGAGGGAGAATGGACATGCATATTGAGTTGTCATACTGTTCTTTCGAGG 1159
Query 61 CGTTCAAGATTCTAGCAAAGAACTATCTGGATCTTGATTCTCATCCCCTGTTCAAGAAGA 120
|||| |||||||| || ||||||||||| ||||||||| ||||||| || ||||||||||
Sbjct 1160 CGTTTAAGATTCTCGCCAAGAACTATCTTGATCTTGATACTCATCCTCTATTCAAGAAGA 1219
Query 121 TTGAGTCTTTGA-TGAAGGAAACAAAGATCGCACCAGCTGATGTTGCTGAGAACTTGATG 179
| || || || | |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1220 TCGAATCATT-ATTGAAGGAAACGAAGATCGCACCAGCTGATGTTGCTGAGAACTTGATG 1278
Query 180 AAGAAGAAT-CTTGAAATAGATGCTGATGGATCTCTTAAAGATCTAATTCAAGCTCTGGA 238
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AAGAAGAATAC-TGAAATAGATGCTGATGGATCTCTTAAAGATCTAATTCAAGCTCTGGA 1337
Query 239 GATGAAGAAGAAGAGTCAGGGAGCTCAACTAGATGAACCAAAGGACAAATTTATCAATAA 298
| ||||||||||| ||| ||||||||| |||||||||| |||||||||| || ||| ||
Sbjct 1338 GGGGAAGAAGAAGATTCATGGAGCTCAAGTAGATGAACCGAAGGACAAATATACCAAGAA 1397
Query 299 GTTTTATAAAGCATTTCGCATGTCATCTAAAGCATGATT 337
|||||||||||||||| |||||||||||||||| |||||
Sbjct 1398 GTTTTATAAAGCATTTTGCATGTCATCTAAAGCCTGATT 1436
> AT3G28610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:10724990-10726414
FORWARD LENGTH=1425
Length=1425
Score = 342 bits (185), Expect = 1e-93
Identities = 277/319 (87%), Gaps = 15/319 (5%)
Strand=Plus/Plus
Query 6 ATCAGGAGAGGGAGAATGGACATGCATATTGAGTTGTCTTACTGTACTTTCGAGGCGTTC 65
|||||||||||||||||||| |||||||| |||||||| || || |||||||||||||||
Sbjct 1105 ATCAGGAGAGGGAGAATGGATATGCATATAGAGTTGTCCTATTGCACTTTCGAGGCGTTC 1164
Query 66 AAGATTCTAGCAAAGAACTATCTGGATCTTGATTCTCATCCCCTGTTCAAG-AAGATTGA 124
|||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1165 AAGACTCTAGCCAAGAACTATCTGGATCTTGATTCTCATCCCCTGTTCA-GTAAGATCGA 1223
Query 125 GTCTTTGATGAAGGAAACAAAGATCGCACCAGCTGATGTTGCTGAGAACTTGATGAAGAA 184
|||||| ||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 1224 GTCTTTAATGAAGGAAACGAATATCGCGCCGGCTGATGTTGCTGAGAACTTGATGAAGAA 1283
Query 185 GAATCTTGAAATAGATGCTGATGGATCTCTTAAAGATCTAATTCAAG-CTCTGGAGATGA 243
||||| ||||| ||||||||||||||||||||| ||||| ||| | | ||||||||| ||
Sbjct 1284 GAATCGTGAAACAGATGCTGATGGATCTCTTAACGATCTGATTGA-GTCTCTGGAGA-GA 1341
Query 244 A-GAAGAAGAGT-CAGGGAGCTCAACTAGATGAAC-CAAAGGACAAATTTATCAATAAGT 300
| ||||||| || ||| ||||||| ||||||||| ||| ||| | || | ||||||
Sbjct 1342 AAGAAGAAG-GTTCAGATAGCTCAAGTAGATGAACACAA-GGA-ATATAG-T-AATAAGA 1396
Query 301 TT-TATAAAGCATTTCGCA 318
| | | ||||||||||||
Sbjct 1397 TAGT-TGAAGCATTTCGCA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16688892668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5