BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936652
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28690.2 | Symbols: | Protein kinase superfamily protein | ... 2298 0.0
> AT3G28690.2 | Symbols: | Protein kinase superfamily protein
| chr3:10755445-10757868 FORWARD LENGTH=1772
Length=1772
Score = 2298 bits (1244), Expect = 0.0
Identities = 1366/1425 (96%), Gaps = 7/1425 (0%)
Strand=Plus/Plus
Query 54 GAGAAATTAGGTGTTGAGAAAGGTGAAAAAGGGAAGATGTTGAGTAAAAAGACGAATGTT 113
|||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 1 GAGAAATTGGGTGTTGAGAAAGGTGAAAAAGGGAAGATGATGAGTAAAAAAAAGAATGTT 60
Query 114 AAAAAAGATGGAGATGAGAGTGAAAGTGGGTTTTGGTTTAGATTCAAGTTTATCTTTAGT 173
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAAGATGGAGATGAGAGTGAAAGTGGGTTTTGGTTTAGATTCAAGTTTATCTTTAGT 120
Query 174 TGTATCTCTTCTAGATCAAAAGTTGATAGTTCCATGAATGCTACTACAGTTATAGCAGAA 233
||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 121 TGTATCTCTTCTAGATCAAAAGTTGATAGTTCCATGAATGCTACTGCTGTTATTGCAGAA 180
Query 234 CCTAAGAAAGTTATTGAGAAGCTTGAAGGTCAGCCAGCTCCGATTAAAGATACTGGTTGT 293
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||
Sbjct 181 CCTAAGAAAGTTATTGAGAAGCTTGAAGGTCATCCAGCTCCGACTAAAGACACTGGCTGT 240
Query 294 GCGGAGAGCGGCTCCTCGACACCTTTAATGAGCGGCGAATTGAAGTATTCTTCTAAGCTA 353
||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 241 GCGGAGAGCGGTTCCTCAACACCTCTAATGAGCGGGGAATTGAAGTATTCTTCTAAGCTA 300
Query 354 CGGATTTTCATGTTTAACGACCTTAAGTTAGCCACTAGGAATTTCAGACCAGAGTCTCTT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGATTTTCATGTTTAACGACCTTAAGTTAGCCACTAGGAATTTCAGACCAGAGTCTCTT 360
Query 414 CTCGGTGAGGGTGGGTTTGGATGTGTTTTTAAAGGATGGATAGAGGAGAATGGAACTGCA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCGGTGAGGGTGGGTTTGGATGTGTTTTTAAAGGATGGATAGAGGAGAATGGAACTGCA 420
Query 474 CCTGTTAAGCCTGGTACTGGTCTAACTGTAGCTGTCAAAACACTGAATCCAGATGGCCTT 533
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CCTGTCAAGCCTGGTACTGGTCTAACTGTAGCTGTCAAAACACTGAACCCAGATGGCCTT 480
Query 534 CAAGGTCACAAGGAGTGGCTGGCTGAGATTAACTTCCTTGGAAACCTTGTTCACCCAAGT 593
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 481 CAAGGTCACAAGGAGTGGCTGGCTGAAATTAACTTCCTTGGAAACCTTGTTCACCCCAGT 540
Query 594 CTTGTTAAATTAGTGGGCTATTGCATGGAAGAAGACCAACGGCTGCTTGTTTACGAGTTT 653
|| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 541 CTGGTTAAATTAGTTGGCTACTGCATGGAAGAAGACCAAAGGCTGCTTGTTTACGAGTTT 600
Query 654 ATGCCACGAGGGAGTTTGGAGAACCATCTTTTCAGAAGGACCTTACCTCTCCCTTGGTCT 713
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGCCACGAGGAAGTTTGGAGAACCATCTTTTCAGAAGGACCTTACCTCTCCCTTGGTCT 660
Query 714 GT-CAGAATGAAAATTGCACTTGGTGCAGCTAAAGGTCTCGCCTTTCTTCACGAAGAAGC 772
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTC-GAATGAAAATTGCACTTGGTGCAGCTAAAGGTCTCGCCTTTCTTCACGAAGAAGC 719
Query 773 TGAGAAGCCAGTCATATATCGAGATTTCAAAACATCTAATATATTACTGGATGCGGAATA 832
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 720 TGAGAAGCCAGTCATATATCGAGATTTCAAAACATCTAATATTTTACTGGATGGGGAATA 779
Query 833 TAATTCAAAGCTGTCTGATTTTGGGCTTGCGAAAGATGCTCCAGACGAGAAAAAATCCCA 892
|||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 TAATGCAAAGCTCTCTGATTTTGGGCTTGCAAAAGATGCTCCAGACGAGAAAAAATCCCA 839
Query 893 TGTATCAACCCGAGTCATGGGAACTTATGGTTATGCTGCCCCCGAATATGTAATGACTGG 952
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 CGTATCAACCCGAGTCATGGGAACTTATGGTTATGCTGCCCCTGAATATGTAATGACTGG 899
Query 953 ACATCTTACAACGAAGAGCGATGTATACAGCTTTGGAGTAGTTTTACTTGAAATATTAAC 1012
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 ACATCTGACAACGAAGAGCGATGTATACAGTTTTGGAGTAGTTTTACTTGAAATATTAAC 959
Query 1013 CGGACGAAGATCTGTGGATAAAAGTCGGCCGAACGGGGAACAAAACTTGGTCGAATGGGT 1072
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 960 TGGACGAAGATCTGTGGATAAAAGTCGGCCGAACGGGGAACAGAACTTGGTAGAATGGGT 1019
Query 1073 GAGACCTCATCTCTTAGACAAGAAAAGGTTGTGCCGGTTATTAGATCCTCGGTTAGAGGG 1132
|||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 1020 GAGACCTCATCTCTTAGACAAGAAAAGGTTTTACCGGCTATTAGATCCTCGGTTAGAGGG 1079
Query 1133 TCACTACTCAATTAAGGGTGCTCAGAAAGCCACGCAAGTAGCGGCGCAATGCCTTAACCG 1192
||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 TCACTACTCGATCAAAGGTGCTCAGAAAGCCACACAAGTAGCGGCGCAATGCCTTAACCG 1139
Query 1193 AGACTCTAAAGCTAGACC-AAAGATGAGTGAAGTTGTGGAAGCCTTAAAGCCGTTACCAA 1251
|||||| ||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1140 AGACTCCAAAGCCAGACCGAAA-ATGAGTGAAGTTGTGGAAGCCTTAAAGCCATTACCAA 1198
Query 1252 ATCTTAAAGACTTTGCGAGCTCTTCTTCTTCTTTCCAAACAATGCAGCCTGTTGCTAAGA 1311
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATCTTAAAGACTTTGCTAGCTCTTCTTCTTCTTTCCAAACAATGCAGCCTGTTGCTAAGA 1258
Query 1312 ACGGAGTCAGAACACAAGGAGGAGGGTTTGTATCGAGAAATGGACCGCCAATGAGGAGTT 1371
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 ACGGAGTCAGAACACAAGGAGGAGGGTTTGTGTCGAGAAATGGACCGCCAATGAGGAGTT 1318
Query 1372 TGTCTAGCTTAAACCTGCCTCAAGCATCCCCTTATCGTTATGCTCGACAATCACCAAAGC 1431
|||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1319 TGTCTAGCTTAAACTTGCCTCAAGCATCCCCTTATCGTTATGCCCGTCAATCACCAAAGC 1378
Query 1432 CTAAAGGAAAAGAGCCATGACTC-AAA-TAGATATTAATT-AGTT 1473
||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 1379 CTAAAGGAAAAGAGCCATGACTCCAAAATAGATATTAATTTAGTT 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5