BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936653
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28700.1 | Symbols: | Protein of unknown function (DUF185) ... 2320 0.0
> AT3G28700.1 | Symbols: | Protein of unknown function (DUF185)
| chr3:10759559-10762114 FORWARD LENGTH=1717
Length=1717
Score = 2320 bits (1256), Expect = 0.0
Identities = 1389/1455 (95%), Gaps = 2/1455 (0%)
Strand=Plus/Plus
Query 4 ATTTTGAAATCGCGAAGATGCTGAGAAAACTACTAACGCAAACAtcttctcgccgtcttc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 ATTTCGAAATCGCGAAGATGCTGAGAAAACTACTAACGCAAACATCTTCTCGCCGTCTTC 64
Query 64 tctcctccggtattcctcctctcttctccaaatcctctctctcaccgttttcctcattat 123
||| |||||| |||||||||||||||| |||||| || | |||||||||||||||||||
Sbjct 65 TCTTTTCCGGTGTTCCTCCTCTCTTCTCTAAATCCACTATTTCACCGTTTTCCTCATTAT 124
Query 124 cctctTCACCGGAGCCACCGTCCTCAGAGAGTACCACCGTCGAACATCCCGGAACAACGA 183
||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||| |
Sbjct 125 CCTCTTCTCCGGAGCCACCGTCCTCAGAGAGTCCCGCCGTTGAACATCCCGGAACAACAA 184
Query 184 TCTCCGTCGATCGTTCTTCTCTCTATACTCCTCCTGATCACTCTCATGAGTCCACACCTG 243
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 185 TCTCCATCGATCGTTCTTCTCTCTATACTCCTCCCGATCACTCTCATGAATCCACACCTG 244
Query 244 AGACTGAGCTCGTTAAGCATCTCAAGAGCATTATCAAGTTTCGAGGTGGTCCAATCTCAG 303
| ||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 245 ATTCTGAGCTCGTTAAGCATCTCAAGAGTATTATTAAGTTTCGGGGTGGACCAATCTCAG 304
Query 304 TAGCTGAGTATATGGAGGAGGTTTTGACTAATCCTAAAGCAGGTTTCTATATGAATCGTG 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 305 TAGCTGAGTATATGGAGGAGGTTTTGACTAATCCTAAAGCAGGATTCTATATGAATCGTG 364
Query 364 ATGTTTTTGGAGCTCAAGGTGATTTCATTACTTCTCCTGAAGTTAGCCAAATGTTCGGCG 423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 365 ATGTTTTTGGAGCTCAAGGTGATTTCATTACTTCTCCAGAAGTTAGCCAAATGTTCGGCG 424
Query 424 AGATGATTGGTGTATGGACTGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTA 483
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AGATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTA 484
Query 484 ATCTTGTTGAGCTAGGTCCAGGTCGTGGAACACTCATGGCTGATCTTCTTCGTGGTACAT 543
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 485 ATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCGATCTCCTTCGTGGTACAT 544
Query 544 CAAAGTTTAGGAATTTTACGGAATCGTTGCATATACATTTGGTGGAATGTAGTCCTGCAT 603
| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 545 CGAAGTTTAAGAATTTCACGGAATCATTGCATATACATTTGGTGGAATGTAGTCCTGCAT 604
Query 604 TGCAGAAGCTTCAGCACCAGAATCTGAAATGTATAGATGAGAGTAGTTTAGAGAAGAAAG 663
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 605 TGCAGAAGCTTCAGCACCAGAATCTGAAATGTACAGATGAGAGTAGTTCGGAGAAGAAAG 664
Query 664 TTATAAGTTCACTAGCTGGGACACCTGTGCACTGGCATGCTACTCTTGAAGAGGTACCAT 723
| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 665 CTGTAAGTTCACTAGCTGGAACACCTGTGCACTGGCATGCTACTCTTCAAGAGGTACCAT 724
Query 724 CAGGAGTACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAAT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CAGGAGTACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAAT 784
Query 784 TTCAGAAATCTTCTCGTGGCTGGTGTGAGAAAATGGTTGATGTAGGAGAAGATTCAAAGT 843
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTCAGAAATCTACTCGTGGCTGGTGTGAGAAAATGGTTGATGTAGGAGAAGATTCAAAGT 844
Query 844 TCCGCTTTGTTCTATCCCCACAGCCTACACCTGCAGCCTTGTATCTCATGAAACGTTGCA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TCCGCTTTGTTCTATCCCCACAGCCTACACCTGCAGCCTTGTATCTCATGAAACGTTGCA 904
Query 904 CATGGGCTACACCTGAGGAAAGGGAGAAACTGGAACATGTCGAGATCAGCCCAAAATCAA 963
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 905 CATGGGCTACACCTGAGGAAAGGGAGAAAATGGAACATGTCGAGATCAGCCCAAAATCAA 964
Query 964 TGGATTTGACCCAAGAAATGGCGAAGAGAATAGGTTCTGATGGAGGTGGAGCACTTATAA 1023
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 965 TGGACTTGACCCAAGAAATGGCCAAGAGAATAGGTTCTGATGGAGGTGGAGCACTTATAA 1024
Query 1024 TCGATTACGGGATGAATGAAATCATTTCAGACAGTCTTCAGGCTATTAGGAAACACAAGT 1083
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1025 TCGATTACGGGATGAATGCAATCATTTCAGACAGTCTTCAGGCTATTAGAAAACACAAGT 1084
Query 1084 TTGTCAACATACTGGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGATTTTCCTT 1143
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1085 TTGTCAACATACTAGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGACTTTCCTT 1144
Query 1144 CAATAAAACACTCTGCTGAAGAAGCTTCAGAAAATGTTTCAGTCCATGGACCTATGACTC 1203
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1145 CAATAAAACACTCCGCTGAGGAAGCTTCAGAAAATGTCTCAGTCCATGGACCTATGACTC 1204
Query 1204 AATCTCAGTTCTTGGGTTCACTTGGAATAAACTTCAGAGTTGATGCGTTGCTTCAGAACT 1263
| || |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1205 AGTCCCAGTTCTTGGGTTCGCTTGGAATAAACTTCAGAGTTGATGCATTGCTACAGAATT 1264
Query 1264 GTAATGACGAGCAAGCTGAGTCCTTAAGGGCAGGATACTGGCAGCTTGTTGGCGATGGTG 1323
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1265 GTAACGACGAGCAAGCTGAGTCTTTAAGGGCAGGATACTGGCAGCTTGTTGGCGATGGTG 1324
Query 1324 AAGCACCTTTCTGGGAAGGACCCGATGAACAAACACCGATTGGAATGGGGACGAGGTATC 1383
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1325 AAGCGCCTTTCTGGGAAGGACCCAATGAACAGACACCGATTGGAATGGGGACGAGGTATC 1384
Query 1384 TGGCAATGACTATTGTCAACAAAAACCAAGGCATTCCAGCTCCATTCCAATAA-GAAAAG 1442
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1385 TTGCAATGAGTATTGTCAACAAAAACCAAGGCATTCCAGCTCCATTCCAATAAAGAAA-G 1443
Query 1443 TTGAAACTTTCAGAG 1457
|||||||||||||||
Sbjct 1444 TTGAAACTTTCAGAG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5