BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936663
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility g... 3096 0.0
> AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility
group | chr3:10784889-10788729 FORWARD LENGTH=2237
Length=2237
Score = 3096 bits (1676), Expect = 0.0
Identities = 1887/1989 (95%), Gaps = 14/1989 (1%)
Strand=Plus/Plus
Query 1 CGTGACTCTC-ACCGGAAACCATGACGGACAGCCATTCCTTCAATAGCATCTCCCTCAGC 59
|||| ||||| || | |||||||| ||||| |||| |||||||||| ||||| ||||||
Sbjct 45 CGTGTCTCTCAACAGAAAACCATGGCGGACGGCCACTCCTTCAATAATATCTCTCTCAGC 104
Query 60 GGCCGCGGCGGAACGAACCCTGGACTT-CTTAAAATCAATTCTGGAGGAATTCAATGGAA 118
|| ||||| |||| |||||| || || ||||||||||||||||||||||||||||||||
Sbjct 105 GGTCGCGGTGGAAAGAACCC-GGGTTTACTTAAAATCAATTCTGGAGGAATTCAATGGAA 163
Query 119 GAAACAAGGTGGTGGAAAAGCTGTGGAAGTTGATAGATCTGATATTGTAAGTGTTAGTTG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GAAACAAGGTGGTGGAAAAGCTGTGGAAGTTGATAGATCTGATATTGTAAGTGTTAGTTG 223
Query 179 GACAAAAGTTACAAAGAGTAATCGATTGGGAGTCAAAACCAAAGATGGATTGTACTATAA 238
||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 224 GACGAAAGTGACAAAGAGTAATCAATTGGGAGTCAAAACCAAAGATGGATTGTACTACAA 283
Query 239 GTTCGTTGGATTTAGAGATCAGGATGTTCCTAGTCTGAGTAGCTTTTTCCAAAGTTCTTA 298
||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 284 GTTCGTTGGATTTCGAGATCAGGATGTTCCAAGTCTGTCTAGCTTTTTCCAAAGTTCTTA 343
Query 299 TGGAAAAACACCGGAAGAGAAGCAATTATC-GATTAGTGGTCGTAATTGGGGTGAGGTGG 357
||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 344 TGGAAAAACACCGGATGAGAAGCAATTATCAG-TTAGTGGTCGTAATTGGGGAGAGGTGG 402
Query 358 ATTTACATGGGAATACACTAACCTTTTTGGTTGGATCAAAGCAAGCTTTTGAAGTATCTT 417
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 403 ATTTACACGGGAATACACTAACCTTTTTGGTTGGATCAAAACAAGCTTTTGAAGTATCTT 462
Query 418 TAGCTGATGTTTCACAGACTCAGATTCAAGGGAAAGATGATGTTACTCTGGAGTTTCATG 477
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 463 TAGCTGATGTTTCACAGACTCAGCTTCAAGGGAAAAATGATGTTACTTTGGAGTTTCATG 522
Query 478 TTGATGATACTGCTGGTGCTAATGAGAAAGACTCGTTGATGGAGATTTGTTTTCATATTC 537
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 523 TTGATGATACTGCTGGTGCTAATGAGAAAGACTCGCTGATGGAGATTAGTTTTCATATTC 582
Query 538 CTAGTTCCAACACCCAGTTTGTTGGTGATGAAAACCGTCCACCTTCTCATGTTTTCAATG 597
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 583 CTAATTCCAACACTCAGTTTGTTGGTGATGAAAACCGTCCACCTTCTCAAGTTTTCAATG 642
Query 598 ACACAATCGTTGCAATGGCTGATGTTAGTTCTGGAGTTGAGGACGCGGTCGTCACATTTG 657
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 643 ACACAATCGTTGCAATGGCTGATGTTAGTCCTGGAGTTGAGGATGCGGTCGTCACATTTG 702
Query 658 ATAGTATTGCAATCCTCACACCCAGGGGTCGGTACAGTGTGGAACTTCACCTTTCTTTCT 717
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 703 AGAGTATTGCAATCCTCACACCCAGGGGTCGGTACAATGTGGAACTTCACCTTTCTTTCT 762
Query 718 TACGTTTGCAAGGACAAGCTAATGACTTTAAAATCCAATACAGTAGTGTTGTCCGGTTGT 777
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 763 TACGATTGCAAGGACAAGCTAATGACTTTAAAATCCAGTACAGTAGCGTTGTCCGTTTGT 822
Query 778 TCTTGCTTCCAAAGTCAAACCAACCACACACGTTTGTTGTTATCTCTCTTGACCCACCAA 837
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 823 TCTTGCTTCCAAAGTCAAACCAACCACACACGTTTGTTGTTATCTCTCTAGACCCACCAA 882
Query 838 TCCGGAAAGGTCAGACAATGTACCCCCACATTGTGATGCAGTTTGAGACAGACACCGTCG 897
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 883 TCCGGAAAGGTCAGACAATGTACCCCCACATTGTTATGCAGTTTGAAACAGACACCGTTG 942
Query 898 TCGAAAGTGAACTGTCAATTAGTGATGATCTTATGAATACAAAGTTCAAGGACAAGCTTG 957
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 943 TCGAAAGTGAACTGTCAATTAGTGATGAACTTATGAATACAAAGTTCAAGGACAAGCTGG 1002
Query 958 AGCGATCATATAAGGGTCTCATTCATGAAGTATTCACCACCGTGTTGCGTTGGCTGTCTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AGCGATCATATAAGGGTCTCATTCATGAAGTATTCACCACCGTGTTGCGTTGGCTGTCTG 1062
Query 1018 GTGCAAAGATCACTAAACCTGGGAAGTTCCGAAGTTCCCAAGATGGGTTTGCAGTGAAAT 1077
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1063 GTGCAAAGATCACTAAACCTGGGAAGTTCCGCAGTTCCCAAGATGGGTTTGCAGTGAAAT 1122
Query 1078 CATCTCTTAAGGCAGAAGATGGGGTTCTTTATCCACTCGAGAAGGGATTTTTCTTCTTAC 1137
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 CGTCTCTCAAGGCAGAAGATGGGGTTCTTTATCCACTCGAGAAGGGATTTTTCTTCTTAC 1182
Query 1138 CTAAACCTCCAACGCTTATACTTCATGATGAGATTGACTATGTTGAGTTTGAAAGGCATG 1197
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1183 CTAAACCTCCAACGCTTATACTTCACGATGAGATTGACTATGTCGAGTTTGAAAGGCATG 1242
Query 1198 CTGCTGGTGGTGCTAATATGCATTACTTTGATCTTCTCATAAGACTGAAAACTGATCATG 1257
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1243 CTGCTGGTGGTGCTAACATGCATTACTTTGATCTTCTCATAAGACTGAAAACTGACCATG 1302
Query 1258 AACATCTGTTCCGTAACATTCAAAGGAATGAGTATCATAATCTCTATACCTTCATAAGCT 1317
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1303 AACATCTGTTCCGTAACATTCAAAGAAATGAGTATCACAATCTCTATACCTTCATAAGCT 1362
Query 1318 CCAAGGGTTTGAAGATTATGAACCTTGGAGGTGCGGGAACCACAGATGGTGTTGCTGCTG 1377
| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 1363 CTAAGGGTTTGAAGATTATGAACCTTGGAGGTGCGGGTACCGCAGACGGTGTTGCTGCTG 1422
Query 1378 TTCTTGGGgatgatgatgatgatgatgCTGTTGACCCTCATCTTGA-GCGTATCAAAAAC 1436
||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1423 TTCTTGGGGATAATGATGATGATGATGCTGTTGACCCTCATCTT-ACGCGTATCAGAAAC 1481
Query 1437 CAAGCTGCTGATGAGAGTGATGAGGAGGACGAAGACTTTGTTATGGGTGAGGATGATGAC 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CAAGCTGCTGATGAGAGTGATGAGGAGGACGAAGACTTTGTTATGGGTGAGGATGATGAT 1541
Query 1497 GGCGGTTCACCAACTGATGATTCTGGCGAGGACGACTCTGATGCTAGTGAAGGCGGTGGA 1556
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1542 GGTGGTTCACCAACTGATGATTCTGGCGGGGACGACTCTGATGCTAGTGAAGGCGGTGTA 1601
Query 1557 GGAGAGA-AA--GAGAAATCTATCAAGAAGGAACCCAAGAAAGAGGCTTCGTCATCGAAA 1613
||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1602 GGAGAGATAAAAGAGAAATCTATCAAGAAGGAACCTAAGAAAGAGGCTTCGTCATCGAAA 1661
Query 1614 GGATTGCCCCCTAAAAG-AAAAGC-GTCAGCCGCAGACGAAGGCAGTAGCAAGAGGAAAA 1671
|||||||| ||||| || |||| | || ||||||||||||||||||||| |||||||| |
Sbjct 1662 GGATTGCCTCCTAAGAGGAAAA-CTGT-AGCCGCAGACGAAGGCAGTAGTAAGAGGAAGA 1719
Query 1672 AGCCGAAGAAGAAGAAGGATCCCAACGCACCAAAAAGAGCGATGTCTGGTTTCATGTACT 1731
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1720 AGCCGAAGAAGAAGAAGGATCCCAACGCACCAAAAAGAGCAATGTCTGGTTTCATGTTCT 1779
Query 1732 TTTCCCAAATGGAAAGAGATAACATAAAGAAGGAACACCCAGGAATAGCATTTGGAGAGG 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 TTTCCCAAATGGAAAGAGATAACATAAAGAAGGAACACCCAGGAATAGCATTTGGAGAGG 1839
Query 1792 TGGGAAAGGTGCTTGGAGATAAGTGGCGCCAAATGTCTGCTGAGGAAAAAGAGCCTTATG 1851
|||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 1840 TGGGAAAGGTGCTTGGAGATAAGTGGCGTCAAATGTCTGCTGATGATAAAGAGCCATATG 1899
Query 1852 AAGCCAAAGCTCAAGTCGACAAGCAGCGATACAAGGATGAGATTAGTGATTACAAGAACC 1911
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1900 AAGCCAAGGCTCAAGTCGACAAGCAGCGATACAAGGATGAGATCAGTGATTACAAGAACC 1959
Query 1912 CTCAGCCGGTGAACGTGGACTCAGGAAACGAGTCTGACAGTAACTAAACTTTGATGCCCC 1971
|||||||| |||| ||||||||||||||||| || || ||||||||||||||||| | ||
Sbjct 1960 CTCAGCCGATGAATGTGGACTCAGGAAACGATTCCGATAGTAACTAAACTTTGATTCTCC 2019
Query 1972 AATATTCTC 1980
|| ||||||
Sbjct 2020 AACATTCTC 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98091864930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5