BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936669

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30993.2 | Symbols:  | Calcineurin-like metallo-phosphoester...   143    2e-33
  AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family...   122    2e-27


> AT4G30993.2 | Symbols:  | Calcineurin-like metallo-phosphoesterase 
superfamily protein | chr4:15098067-15100558 FORWARD LENGTH=1615
Length=1615

 Score =  143 bits (77),  Expect = 2e-33
 Identities = 96/105 (91%), Gaps = 2/105 (2%)
 Strand=Plus/Plus

Query  343  TGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGAAGCAGAGGAAGCC-AAG  401
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct  649  TGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGAACCAGAGGAA-CCTAAG  707

Query  402  GGAATTGCGAGCACATTTGATCAAATCATGACCAAATATGGAGTG  446
             || | || || |||||| ||||||||||||||||||||||||||
Sbjct  708  AGAGTGGCAAGGACATTTCATCAAATCATGACCAAATATGGAGTG  752


> AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family 
protein | chr1:18707990-18715935 REVERSE LENGTH=2907
Length=2907

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 153/191 (80%), Gaps = 22/191 (12%)
 Strand=Plus/Plus

Query  141  CCGTTCCCATCTCCGTCGCCGGCGATCATCGCCGTCGTTTCTGTTCCTCCTCACTCTTCT  200
            ||| ||| |||||||||||||||||||||||||| |  || || || |  ||  || || 
Sbjct  7    CCGATCCGATCTCCGTCGCCGGCGATCATCGCCG-CCATT-TGCTCTTGTTC-TTCCTC-  62

Query  201  ATTCT-CTGCGTTCATTCTATCCTTCAAATTGC-TTCGTCCATTTCGAGTGA-TTTTGG-  256
            ||| | | ||||||  ||  || |||| | | | ||  | |||||||||||| |||||| 
Sbjct  63   ATT-TAC-GCGTTC--TC--TCTTTCATACT-CATT-TTTCATTTCGAGTGATTTTTGGT  114

Query  257  -TT-TCAT-C--A-TACAAGCCATGGATAAGTCAAGTGCTTTAGAGTATATCAACCAGAT  310
             || |||| |  | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  115  TTTATCATACAAATTACAAGCCATGGATAAGTCGAGTGCTTTAGAGTATATCAACCAGAT  174

Query  311  GTTCCCAACAG  321
            |||||||||||
Sbjct  175  GTTCCCAACAG  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22756068591


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5