BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936671
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28780.1 | Symbols: | Protein of unknown function (DUF1216)... 1369 0.0
> AT3G28780.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10805911-10808458 REVERSE LENGTH=2334
Length=2334
Score = 1369 bits (741), Expect = 0.0
Identities = 1410/1714 (82%), Gaps = 122/1714 (7%)
Strand=Plus/Plus
Query 1 TTACATATCTGACaaaaaaaaTGGCTAAATTTCCTATAGCGGTATGTCTAATGTTAATAC 60
||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 71 TTACATATCTGAC-AAAACAATGGCTAGATTTCCTATAGCAATATGTCTAATGTTAATAC 129
Query 61 TAGTAGCATCAAGTACCATATATGAAGCACAAGCTGGGTTCTTATTAAGGCATTACATGA 120
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 130 TAGTAGCATCAAGTACCATATATGAAGCGCAAGGTGTATTCTTATTAAGGCATTACATGA 189
Query 121 AGAAATTTCCTCAAAATTCCCAAGATTTTGAGCCTTTTGCTTACAAGGGTATGCTTAGTT 180
| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 190 ATAAATTTCCTAAAAATTCCCAAGACTTTGAGCCTTTTGCTTACAAAGGTATGCTTAGTT 249
Query 181 TTGTGGACAACCTTGA-AAGTATGGCTCCAGG-AAAAGGAGAGTACAAGGATTTCTTCTC 238
||||||| |||||||| || ||||||||| || |||||||||||||||||||||||||||
Sbjct 250 TTGTGGATAACCTTGAGAA-TATGGCTCC-GGAAAAAGGAGAGTACAAGGATTTCTTCTC 307
Query 239 AAAGCTGAAAGCTTTCATGGGCTTCATAAACACGGCAAAAGGGTCTTCTTCAGACTTCCA 298
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 308 AAAGCTGAAAGCTTTCATGTCCTTCATAAACACGGCAAAAGGGTCGTCTTCAGAGTTCCA 367
Query 299 GTCTCAGATGAAACAACAATCTGAGGGCCTCTTCAAGGCTATCTCTGCATTGGGTATCAA 358
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 368 GTCTCAAATGAAACAACAAGCTGAGGGCCTCTTCAAGGCTATCTCTGCATTGGGTGTCAA 427
Query 359 AGGAGGATCATCAGCTGATACAAGCAAACTGATCGAGAGTTTGATGTCAATGGGAAAAAC 418
|||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 428 AGGAGGATCATCGGCTGATACGAGCAAATTGATCGAGAGTTTGATGTCAATGGGGAAAAC 487
Query 419 TTTTGCTGAATTTAAGAGGAGTGGTGCAACAACGATGACAAGCGAACAAAGAAGAGAGCT 478
|||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| |
Sbjct 488 ATTTGCTGAATTTAAGAGGAGCGGTGCAACAATGATGACAAGTGAACAAAGAAGAGAGTT 547
Query 479 GGTCACATCTATGGCAAAATGGGCACAAGTGATTGGTCAGTTTGTGAAAAAAGTTGGCGA 538
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 548 AGTTACATCTATGGCAAAATGGGCACAAGTGATTGGTCAATTTGTGAAAAAAGTTGGCGA 607
Query 539 CCAGACTGGTGACGGCAAAAATATTGATCTTTCATCACTTCTTGGAGGTGGAAGCTCTGG 598
|||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 608 TCAGAATGGTGACGGCGCAAAGATTGATCTGTCATCACTTCTTGGAGGTGGAAGCTCTGG 667
Query 599 CTTTGGTAGCGGTGGTGATAGCGGAAGTCCAAGCTCTGACAGTGGTTCCCCCTCTGCCGA 658
| |||| ||| |||||||||| ||||||||| |||||||||| ||||| ||||| |||||
Sbjct 668 CCTTGGAAGCAGTGGTGATAGTGGAAGTCCAGGCTCTGACAGCGGTTCTCCCTCCGCCGA 727
Query 659 TACTGGGAGTCCTACCGACGGTGGAAGCTATGGAGATAGCACAGGTGATACTGGAAGCTC 718
|||||||||||||| |||||||||||||||||||| | ||| ||||||| |||||| ||
Sbjct 728 CACTGGGAGTCCTACGGACGGTGGAAGCTATGGAGACACCACTGGTGATAGTGGAAGTTC 787
Query 719 GGCAAGTAGCCCCTCCTATCCAAGTGATGGTGGCAGTGGAAGCACTGCTGGTGGCCCTAG 778
|||| |||| || || ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 788 GGCAGGTAGTCCATCATATCCAAGTGATGATGGTAGTGGAAGCACTGCTGGTGGCCCTAG 847
Query 779 TGGAAGTACAACTGATGATGGCAGTTCCGCCGGAGGAGAAAGTTCAATGGGTGGTGATTC 838
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 848 TGGAAGTACAACTGATG--G----TTCTGCCGGAGGAGAAAGTTCAATGGGTGGTGATTC 901
Query 839 CTCTTCTGCTGTAGGTGGAGCAGCTGGGGAGACTGCAAGTGCAACTGA-TGCCGATAGTG 897
||||||||||| | |||||||||||||| || ||||||| | | |||||||||||
Sbjct 902 CTCTTCTGCTG--G----AGCAGCTGGGGAGAGTGGAAGTGCAGCA-ACTGCCGATAGTG 954
Query 898 GAGGTGCTGCTGGTGGTGAAGCTGCTAGTGGTGGAGCTTCTGGTGGC--TCGGCTGAAAC 955
||| ||||||||||| || | ||||| || ||| |||||| | | | || |
Sbjct 955 GAGATGCTGCTGGTGCCGA---T---AGTGGAGGTGCTGCTGGTGCCGATAG--TGGA-- 1004
Query 956 CGGTGCTGAAAGCGCA-AGTGGTGGAGATGCTTCTGGTGGCTCAG-CTGAAACTGGTGGT 1013
||||||| || || | | |||||| |||| ||| ||| | | | | || |||||
Sbjct 1005 -GGTGCTGCTAGTGCCGA-TAGTGGAGGTGCTGCTGCTGG-TGAAACCG---CTAGTGGT 1058
Query 1014 GAAAGC-GCTGGTGGTGGAGCTGCATCTGGTGGCGCAGCTGAAACCGGTGGTGAAAGTGG 1072
| | || |||| | || | | | |||||||| | ||||||||||||||||||||||
Sbjct 1059 GGA-GCTGCTGCCGCTG-A-CA-CTTCTGGTGGTTCGGCTGAAACCGGTGGTGAAAGTGC 1114
Query 1073 TGGAGCTACTACCGGTGGTTCGGCTGAAACCGGTGCTGAAAGTGGTGGAGCTGCTTCCGG 1132
| || | ||||| | ||| | | ||| ||| |||||||||||||||
Sbjct 1115 T--AG-T------GGTGGA--G-CTG---CT--T-CTG---GTGCTGGAGCTGCTTCCGG 1153
Query 1133 TGGCTCAGCTGAAACCGGTGATGAAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAGC 1192
|| ||||||| ||||||||| ||||||||||| ||||||||| ||||| || |||||| |
Sbjct 1154 TGCCTCAGCTAAAACCGGTGGTGAAAGTGGTGAAGCTGCTTCTGGTGGTTCAGCTGAAAC 1213
Query 1193 CGGTGCTGAAAGTG---GTG--G-AGCTACTTCCGGTGGTTCGGCTGAAACCGGTGCTGA 1246
|||| |||||||| ||| | |||| |||||||||||||||||||||| |||| |||
Sbjct 1214 TGGTGGTGAAAGTGCTAGTGCTGGAGCTGCTTCCGGTGGTTCGGCTGAAACTGGTGGTGA 1273
Query 1247 AAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAATGCTAGTGGTGG 1306
||| ||| || || | || | || | | | |||| ||||||| |||||||||||
Sbjct 1274 AAGCGGT--AG-TGGT---GGAG-CT-G-C--AT-CCGGTGGTGAAAGCGCTAGTGGTGG 1321
Query 1307 AGC-AGCTTCCGGTGGCTCGGCTGAAACCGGTGCGGAAAGTGGTGGAGCTGCTTCCGGTG 1365
||| | | ||||||||||| |||||||||||| | || || | | | | ||||
Sbjct 1322 AGCTA-CATCCGGTGGCTCACCTGAAACCGGTG-GCTCAGC--TGAAACCGGT---GGTG 1374
Query 1366 ---GTGCTAGTGGTGGAGCGGCTTCTGGTGGCTC--G-GCT-GAAGCCG-G-TGCTGAAA 1416
| |||||||||||||| || || ||||| | ||| | | | | |||| |
Sbjct 1375 AAAGCGCTAGTGGTGGAGCTGCATCCGGTGGAGAAAGTGCTAGTGGTGGAGCTGCTTCCA 1434
Query 1417 GTGG-TGGAGCTGCTTCCGGTGGTGCTAGTGGTGGTGCTGCATCCGGTGGTTCGGCTGAA 1475
|||| | | | || ||||||| || ||| ||| | |||||||| || ||||||
Sbjct 1435 GTGGCTCG-GTTGAAAGTGGTGGTGAAAGCACTGGAGCTACTTCCGGTGGCTCAGCTGAA 1493
Query 1476 ACCGGTGCTGAAAG---T-G-G-TGGAGCTGCTTCCGGTGGTG------CTAGTGGTGGA 1523
||| ||| |||||| | | | ||||||||| |||||||||| |||||||||||
Sbjct 1494 ACCAGTGATGAAAGCGCTAGTGGTGGAGCTGCATCCGGTGGTGAGAGTGCTAGTGGTGGA 1553
Query 1524 GCCGCATCCGGTGGCTCGGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCC 1583
|| || ||||||||||||||||||||||| ||||||||| |||| |||||| ||||||
Sbjct 1554 GCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAGCACTAGCAGTGGAGTTGCTTCT 1613
Query 1584 GGTGGCTCGGCTGAAACCGGCGGTGAAAGTGCTAGTGGC-GGAGCTGCTTCTGGTGGCTC 1642
|||||||| || | || ||||||||||||||| | ||||||||||| ||||||||
Sbjct 1614 GGTGGCTC-----AA-CTGGTAGTGAAAGTGCTAGTG-CTGGAGCTGCTTCCGGTGGCTC 1666
Query 1643 GACTGAAACCGGTGGTGGAGCTGCTGCTGGTGGC 1676
|||||| || ||||||||| ||||| || |||
Sbjct 1667 GACTGAGGCCAATGGTGGAGCCGCTGCCGGAGGC 1700
Score = 425 bits (230), Expect = 7e-118
Identities = 261/276 (95%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 1782 AGTGGAGGAACCTACACAGATTCTACAGGTGGAAGTCCAGCCGGTAG-CCCTTCTGCCGG 1840
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||
Sbjct 1860 AGTGGAGGAACCTACACAGATTCTACAGGTGGAAGTCCAACCGGTAGTCCC-TCTGCGGG 1918
Query 1841 TGGCCCAAGTGGAAGTGCAACTGAAAGCTCGATGGAAGGTGGAGCCTCCGGAGGCCAATC 1900
|||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||
Sbjct 1919 TGGCCCAAGTGGAAGTGCAAGTGAAAGCTCGATGGAAGGTGGAACTTTCGGAGGCCAATC 1978
Query 1901 TATGGGAGGACAAGCCGGCAGTGTTAGCTATCAATCTGCCAACTATCAAAAGACGCACTC 1960
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 1979 TATGGGAGGACAAGCCGGCAGTGCTAGCTATCAATCTACCAACTATCAAAAGACACACTC 2038
Query 1961 AAAATCCGCAGGCAAAAGCTCTTTCAGCCATTCCTCGGAAGAGAAAAGCTCTGGCAGCGC 2020
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 2039 AAAATCCGCAGGCAAAAGCTCCGTCAGCCATTCCTCGGAAGAGAAAAGCTCCGACAGCGC 2098
Query 2021 CAATGCGGACTCGTAGATTTAGACCCAGAGGTCAAA 2056
||||||||||||||||||||||||||||||||||||
Sbjct 2099 CAATGCGGACTCGTAGATTTAGACCCAGAGGTCAAA 2134
Score = 263 bits (142), Expect = 5e-69
Identities = 402/518 (78%), Gaps = 55/518 (11%)
Strand=Plus/Plus
Query 1159 GTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAGCCGGTGCTGAAAGTGGTGGAGCTACTT 1218
||| ||||||||||||||||| ||| ||| || |||||| ||||||||||| |||| |||
Sbjct 1135 GTGCTGGAGCTGCTTCCGGTGCCTCAGCTAAAACCGGTGGTGAAAGTGGTGAAGCTGCTT 1194
Query 1219 CCGGTGGTTCGGCTGAAACCGGTGCTGAAA--G-T-G-G-TGGAGCTGCTTCCGGTGGCT 1272
| |||||||| |||||||| |||| ||||| | | | | |||||||||||||||||| |
Sbjct 1195 CTGGTGGTTCAGCTGAAACTGGTGGTGAAAGTGCTAGTGCTGGAGCTGCTTCCGGTGGTT 1254
Query 1273 CGGCTGAAACCGGCGGTGAAAATGCTAGTGGTGGAGCAGCTTCCGGTGGCTCGGCTGAAA 1332
|||||||||| || ||||||| | |||||||||||| || ||| || | || |||||
Sbjct 1255 CGGCTGAAACTGGTGGTGAAAGCGGTAGTGGTGGAGCTGCATCC---GG-T-GG-TGAAA 1308
Query 1333 CCGGTGCGGAAAGTGGTGGAGCTGCTTCCGGTGGTGCTAGTGGTGGAGCGGCTTCTGGTG 1392
|| | |||||||||||| | |||||| | ||| | || | | ||||
Sbjct 1309 -----GC-GCTAGTGGTGGAGCTACATCCGGT-G-GCT-CACCT-GA--AAC--C-GGTG 1353
Query 1393 GCTCGGCTGAAGCCGGTGCTG-AA-----AGTGGTGGAGCTGCTTCCGGT---G---GTG 1440
|||| |||||| |||||| || || |||||||||||||| |||||| | |||
Sbjct 1354 GCTCAGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCATCCGGTGGAGAAAGTG 1413
Query 1441 CTAGTGGTGGTGCTGCATCCGGTGGTTCGGCTGAAACCGGTGCTGAAAGTGGTGGAGCTG 1500
|||||||||| ||||| ||| |||| |||| ||||| |||| |||||| |||||||
Sbjct 1414 CTAGTGGTGGAGCTGCTTCCAGTGGCTCGGTTGAAAGTGGTGGTGAAAGCACTGGAGCTA 1473
Query 1501 CTTCCGGTGG-T--GCT------AGTGGTG-GAGCCGCATCCGGTGGCTCG-GCTGAAAC 1549
|||||||||| | ||| |||| || || ||| | |||| | | |||| | |
Sbjct 1474 CTTCCGGTGGCTCAGCTGAAACCAGTGATGAAAG-CGC-T--AGTGG-TGGAGCTGCATC 1528
Query 1550 CGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGA 1609
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 CGGTGGTGAGAGTGCTAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGA 1588
Query 1610 AAGTGCTAGTGGCGGAGCTGCTTCTGGTGGCTCGACTG 1647
||| |||| | |||| ||||||||||||||| ||||
Sbjct 1589 AAGCACTAGCAGTGGAGTTGCTTCTGGTGGCTCAACTG 1626
Score = 198 bits (107), Expect = 2e-49
Identities = 405/537 (75%), Gaps = 68/537 (13%)
Strand=Plus/Plus
Query 907 CTGGTGGTG-AAGCTGCTAGTGGTGGA---GCTTCTGGTGGCTCGGCTGAAACCGGTGCT 962
||||||||| ||| |||||||| |||| ||||| ||||| ||||||||||| |||| |
Sbjct 1213 CTGGTGGTGAAAG-TGCTAGTGCTGGAGCTGCTTCCGGTGGTTCGGCTGAAACTGGTGGT 1271
Query 963 GAAAGCGCAAGTGGTGGAGATGCTTCTGGTGGCT--CAGCTGAAACTGGTGGTG--AAAG 1018
||||||| |||||||||| ||| || ||||| | ||| | | |||||| | | |
Sbjct 1272 GAAAGCGGTAGTGGTGGAGCTGCATCCGGTGG-TGAAAGC-GCTAGTGGTGGAGCTACAT 1329
Query 1019 CGCTGGTGG-TGGAGCTGCATCTGGTGGCGCAGCTGAAACCGGTGGTG-AA-----AGTG 1071
| | ||||| | | ||| | | |||||| |||||||||||||||||| || ||||
Sbjct 1330 C-C-GGTGGCT-CACCTGAAACCGGTGGCTCAGCTGAAACCGGTGGTGAAAGCGCTAGTG 1386
Query 1072 GTGGAGCTACTA-CCGGTGGTTCGGCTGAAACCGGTGCTGAAAGTGGTGGAGCTGCTTCC 1130
|||||||| | | || || | || |||| ||||| ||||||||||||||||||
Sbjct 1387 GTGGAGCTGC-ATCC---GG-T-GG-AGAAA---GTGCT---AGTGGTGGAGCTGCTTCC 1433
Query 1131 GGTGGCTCAGCTGAAACCGGTGATGAAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAA 1190
||||||| | ||||| |||| |||||| ||||||| ||||||||||||| ||||||
Sbjct 1434 AGTGGCTCGGTTGAAAGTGGTGGTGAAAGCACTGGAGCTACTTCCGGTGGCTCAGCTGAA 1493
Query 1191 GCCGGTGCTG-AA-----AGTGGTGGAGCTACTTCCGGTGGTTCGGCTGAAACCGGTGCT 1244
|| ||| || || |||||||||||| | ||| || | || ||| | |||||
Sbjct 1494 ACCAGTGATGAAAGCGCTAGTGGTGGAGCTGCATCC---GG-T-GG-TGAGA---GTGCT 1544
Query 1245 GAAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAATGCTAGTGGT 1304
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1545 ---AGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAGCACTAGCAGT 1601
Query 1305 GGAGCAGCTTCCGGTGGCTCGGCTGAAACCG---GTGCGGAAAGTGGTGGAGCTGCTTCC 1361
|||| ||||| |||||||| ||| | | |||| | ||| |||||||||||||
Sbjct 1602 GGAGTTGCTTCTGGTGGCTCAACTGGTAGTGAAAGTGCT-A--GTGCTGGAGCTGCTTCC 1658
Query 1362 GGTGG-T-G-CT-AG-----TGGTGGAGCGGCTTCTGGTGGCTCGGCTGAAGCCGGT 1409
||||| | | || || ||||||||| ||| | || ||||| |||||||||||
Sbjct 1659 GGTGGCTCGACTGAGGCCAATGGTGGAGCCGCTGCCGGAGGCTCAACTGAAGCCGGT 1715
Score = 167 bits (90), Expect = 4e-40
Identities = 313/413 (76%), Gaps = 46/413 (11%)
Strand=Plus/Plus
Query 893 TAGTGGAGGTGCTGC-T--GGTGGTG-AAGCTGCTAGTGGTGGAGCT---TCTGGTGGCT 945
|||||| || ||||| | ||||||| |||| ||||||||||||||| || |||||||
Sbjct 1280 TAGTGGTGGAGCTGCATCCGGTGGTGAAAGC-GCTAGTGGTGGAGCTACATCCGGTGGCT 1338
Query 946 CGGCTGAAACCGGT-GCTGAAAGC-GCAAGTGGTGGAG-ATGCTTCTGGTGGCT-CAGCT 1001
| ||||||||||| ||| ||| | || ||||| | | || || |||| | ||||
Sbjct 1339 CACCTGAAACCGGTGGCT--CAGCTGAAACCGGTGGTGAAAGC-GCTAGTGG-TGGAGCT 1394
Query 1002 GAAACTGGTGGTGAAAGCGCTGGTGGTGGAGCTGCATCTGGTGGCGCAGCTGAAACCGGT 1061
| | | ||||| ||||| ||| ||||||||||||| || ||||| | | ||||| |||
Sbjct 1395 GCATCCGGTGGAGAAAGTGCTAGTGGTGGAGCTGCTTCCAGTGGCTCGGTTGAAAGTGGT 1454
Query 1062 GGTGAAAGTGGTGGAGCTACTACCGGTGGTTCGGCTGAAACCGGTGCTG-AA-----AGT 1115
|||||||| |||||||||| ||||||| || ||||||||| ||| || || |||
Sbjct 1455 GGTGAAAGCACTGGAGCTACTTCCGGTGGCTCAGCTGAAACCAGTGATGAAAGCGCTAGT 1514
Query 1116 GGTGGAGCTGCTTCCGGTGGCTCAGCTGAAACCGGTGATGAAAGTGGTGGAGCTGCTTCC 1175
||||||||||| |||||| | | ||| | ||| | ||||||||||||||||||
Sbjct 1515 GGTGGAGCTGCATCCGGT-G----G-TGAGA---GTGCT---AGTGGTGGAGCTGCTTCC 1562
Query 1176 GGTGGCTCGGCTGAAGCCGGTGCTGAAAG---T-G--GTGGAGCTACTTCCGGTGGTTCG 1229
||||||||||||||| |||| | |||||| | | |||||| | |||| ||||| ||
Sbjct 1563 GGTGGCTCGGCTGAAACCGGCGGTGAAAGCACTAGCAGTGGAGTTGCTTCTGGTGGCTCA 1622
Query 1230 GCTGAAACCG---GTGCTGAAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGA 1279
||| | | ||||| | ||| |||||||||||||||||||||| ||||
Sbjct 1623 ACTGGTAGTGAAAGTGCT-A--GTGCTGGAGCTGCTTCCGGTGGCTCGACTGA 1672
Score = 130 bits (70), Expect = 6e-29
Identities = 263/349 (75%), Gaps = 42/349 (12%)
Strand=Plus/Plus
Query 1261 CTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAATGCTAGTGGTGGAGCAGCTTCCGGTG 1320
|||| ||||| |||||||||||||| ||||||| ||||||||||||||| ||||| |||
Sbjct 1078 CTTCTGGTGGTTCGGCTGAAACCGGTGGTGAAAGTGCTAGTGGTGGAGCTGCTTCTGGT- 1136
Query 1321 GCTCG-GCTGAAACCGGTGCGGAAAGTGGTGGAGCTGCTTCCGGTGGTGCTAGTGGTGGA 1379
||| | |||| ||||||| | |||| ||||||||| ||||||| |
Sbjct 1137 GCTGGAGCTGCTTCCGGTGC--------CT-CAGCTAAAACCGGTGGTGAAAGTGGTGAA 1187
Query 1380 GCGGCTTCTGGTGGCTCGGCTGAAGCCGGTGCTGAAA--G-T-G-G-TGGAGCTGCTTCC 1433
|| ||||||||||| || |||||| | |||| ||||| | | | | |||||||||||||
Sbjct 1188 GCTGCTTCTGGTGGTTCAGCTGAAACTGGTGGTGAAAGTGCTAGTGCTGGAGCTGCTTCC 1247
Query 1434 GGTGG-T--GCTAG-TGGTGGTGCTGCATCCGGT-G-GTTCG-GCTGAAACCGGTGCTG- 1485
||||| | ||| | ||||| || | |||| | | | | |||| | |||||| ||
Sbjct 1248 GGTGGTTCGGCT-GAAACTGGTGGTGAAAGCGGTAGTGGTGGAGCTGCATCCGGTGGTGA 1306
Query 1486 AA-----AGTGGTGGAGCTGCTTCCGGTGGTGCTAGTGGTGGAGCC-GCATCCGGTGGCT 1539
|| |||||||||||| | |||||| | || | | || | | |||||||||
Sbjct 1307 AAGCGCTAGTGGTGGAGCTACATCCGGT-G-GC------T-CA-CCTGAAACCGGTGGCT 1356
Query 1540 CGGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCCGGTGG 1588
| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1357 CAGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCATCCGGTGG 1405
Score = 108 bits (58), Expect = 3e-22
Identities = 145/185 (78%), Gaps = 14/185 (8%)
Strand=Plus/Plus
Query 1432 CCGGTGGTGCTAGTGGTGGTGCTGCATCCGGTGGTTCGGCTGAAACCGGTGCTGAAA--G 1489
||||||||| ||||||| ||||| || |||||||| |||||||| |||| ||||| |
Sbjct 1168 CCGGTGGTGAAAGTGGTGAAGCTGCTTCTGGTGGTTCAGCTGAAACTGGTGGTGAAAGTG 1227
Query 1490 -T-G-G-TGGAGCTGCTTCCGGTGG-T--GCTAG-TGGTGGAGCCGCATCCGGT-G-GCT 1539
| | | |||||||||||||||||| | ||| | ||| | | | |||| | | |
Sbjct 1228 CTAGTGCTGGAGCTGCTTCCGGTGGTTCGGCT-GAAACTGGTGGTGAAAGCGGTAGTGGT 1286
Query 1540 CG-GCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAA 1598
| |||| | ||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 1287 GGAGCTGCATCCGGTGGTGAAAGCGCTAGTGGTGGAGCTACATCCGGTGGCTCACCTGAA 1346
Query 1599 ACCGG 1603
|||||
Sbjct 1347 ACCGG 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101907106350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5