BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936672
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28790.1 | Symbols: | Protein of unknown function (DUF1216)... 979 0.0
AT3G28830.1 | Symbols: | Protein of unknown function (DUF1216)... 233 3e-60
AT3G28980.1 | Symbols: | Protein of unknown function (DUF1216)... 97.1 5e-19
AT3G28820.1 | Symbols: | Protein of unknown function (DUF1216)... 91.6 2e-17
AT3G28810.1 | Symbols: | Protein of unknown function (DUF1216)... 86.1 1e-15
> AT3G28790.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10813331-10815699 REVERSE LENGTH=2184
Length=2184
Score = 979 bits (530), Expect = 0.0
Identities = 850/990 (86%), Gaps = 80/990 (8%)
Strand=Plus/Plus
Query 694 cccaccccttctacgcctaccccttctacgcctaccccttctacgcccaccccttcttct 753
||||| ||||||||||| || |||||||| ||||||||||||||| ||| || | ||
Sbjct 997 CCCACTCCTTCTACGCCCACTCCTTCTACACCTACCCCTTCTACG-CCA-GCC--C--CT 1050
Query 754 tcAACTCCTTCTGGTGGCAAAACCTCTGAAAAGGGAAGTGAGAGTTCTAGTGGAAGTGCT 813
||||||||| ||| |||||||||||||| | | ||| || || | | | ||||||
Sbjct 1051 TCAACTCCTGCTGCTGGCAAAACCTCTG---A-GAAAG-GA-AG---T-G-AG-AGTGCT 1098
Query 814 TCAACGAAAAAAGAATCTAAATCTAAGAGTGAAAGTGAAA--G-TGCT-GC--------T 861
|| | ||||||||||||||| ||||||||||||||||||| | |||| || |
Sbjct 1099 TCGATGAAAAAAGAATCTAATTCTAAGAGTGAAAGTGAAAGTGCTGCTAGCGGAAGTGTT 1158
Query 862 TCCAAGACAAAAG-AATC--C--A-GCAG---TGGTGGTACTTACAAAGACACTACCGGT 912
||||||||||||| || | | | | || ||| | |||||||||||||||||||||
Sbjct 1159 TCCAAGACAAAAGAAACCAACAAAGGAAGCTCTGGAGACACTTACAAAGACACTACCGGT 1218
Query 913 ACATCTTCGGGAAGTCCGAGTGGAAGTCCCTCTGGTAGCCCTTCTCTCTCAACTTCTACT 972
|||||||||||||||||||| ||||||||| ||| |||||| ||| |||||||||||||
Sbjct 1219 ACATCTTCGGGAAGTCCGAGCGGAAGTCCCAGTGGCAGCCCTACTCCCTCAACTTCTACT 1278
Query 973 GATGGTAAAACCTCTTC--AA--AAG-G-AAGCGCAAGTTCTGGAGCAAGTGCAAATGCT 1026
||||||||| ||||||| || ||| | ||| |||||| ||||||||||||| || | |
Sbjct 1279 GATGGTAAAGCCTCTTCGAAAGGAAGTGCAAGTGCAAGTGCTGGAGCAAGTGC-AA-G-T 1335
Query 1027 GAAGCAAGTGCTGGCGCAAATGCAAGTGCTGGAGAAA-----G-TTCTCAAAAGAAAGAA 1080
||||||||||| || | ||||||||||| ||||| | |||||||||||||||
Sbjct 1336 ---GCAAGTGCTGGTGCTAGTGCAAGTGCTGAAGAAAGTGCTGCTTCTCAAAAGAAAGAG 1392
Query 1081 TCCAACAGCAAAAGTTCAACTAGTAGCTCATCCACCACATCAGTGAAAGAAGTTGAGAGC 1140
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1393 TCCAACAGCAAAAGTTCATCTAGTAGCTCATCCACCACATCAGTAAAAGAAGTTGAGA-C 1451
Query 1141 -CAAACTTCCTCAGAAGTCAGTTCTTTCATTTCAAACCTT-GAGAAGAAGTATACTGGAA 1198
||||||||||||||||||| |||||||||||| || ||| ||||||||||| |||||||
Sbjct 1452 ACAAACTTCCTCAGAAGTCAATTCTTTCATTTCTAA-CTTGGAGAAGAAGTACACTGGAA 1510
Query 1199 ATGCAGAACTCAAGGTCTTCTTTGACAAA-CTAAAGACTTCCATGTCTGCTTCCTCAAAG 1257
|| |||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 1511 ATTCAGAGCTCAAGGTCTTCTTTGA-AAAGCTAAAGACTTCCATGTCTGCTTCCGCAAAG 1569
Query 1258 CTTA-CTGCCTCAAACGCAAAAGAATTCGTCTCCGGGATGAGATCTGCTGCTTCAAAACT 1316
| || || ||||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1570 C-TATCTACCTCAAACGCAAAAGAATTGGTCACCGGGATGAGATCTGCTGCTTCAAAAAT 1628
Query 1317 ATCTGAGGCCATGATGTTCGTGCGTTCAAGGTTCAGCAAATCCGAAGAGACCAAGACCTC 1376
| ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1629 AGCTGAGGCAATGATGTTCGTGAGTTCAAGGTTTAGCAAATCCGAAGAGACCAAGACCTC 1688
Query 1377 CATGGAATCTTGCCAACAACAAGTAATGAAGAGTCTCCAGGCACTACAAGACATCAACAG 1436
||||| ||||||||||||| |||| ||| |||||||| ||| ||||||||||||||||||
Sbjct 1689 CATGGCATCTTGCCAACAAGAAGTGATGCAGAGTCTCAAGGAACTACAAGACATCAACAG 1748
Query 1437 TCAAATTGTGAGTGGCAAGACAGTGACATCAACACAACAGACAGAGCTTAAGCAGACAAT 1496
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 TCAAATCGTGAGTGGCAAGACAGTGACATCAACACAACAGACAGAGCTTAAGCAGACAAT 1808
Query 1497 CACCAAGTGGGAACAAGTCACAACCCAATTCGTTGAGACTGCTGcttcttcaagttcatc 1556
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1809 CACCAAGTGGGAACAAGTCACAACCCAATTCGTTGAGACGGCTGCTTCTTCAAGTTCATC 1868
Query 1557 ttcatcttc-t-t-c-t-t-c-t-t-catct-C-----AGAGCAGTGCAGGGATGGCCAT 1601
||||||||| | | | | | | | | | ||| | || | |||||| |||||||||
Sbjct 1869 TTCATCTTCATCTTCATCTTCGTCTTCTTCTTCCTCTCAGGGAAGTGCAAAGATGGCCAT 1928
Query 1602 GAAAAACTGAGTACAAAGCCAAAGCTACAT 1631
||||||||||||||||||||||||||||||
Sbjct 1929 GAAAAACTGAGTACAAAGCCAAAGCTACAT 1958
Score = 843 bits (456), Expect = 0.0
Identities = 485/499 (97%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 1 AACTTTTCTTATATAT--AAAAAATGGCGAAAAATTTACTAGCAATATGTCTGGTGTTTA 58
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 AACTTTTCTTATATATAAAAAAAATGGCGAAAAATTTACTAGCAATATGTCTGGTGTTTA 148
Query 59 TGGTTGCATCAAGTGTGGTCTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGA 118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGGTTGCATCAAGTGTGGTTTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGA 208
Query 119 GGAGGAAGTTTCCCAGACGTTGTGTCGACTTTGCCCCTTTTGCTAGCAAAGGTATGTTGA 178
||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 209 GGAGGAAGTTTCCCAGACGTTGTATCGACTTTGCCCCTTATGCTGGCAAAGGTATGTTGA 268
Query 179 TGCTCGTGAGCAACCTTGAAGGTGGATGTCCCGCAACTAGAGAGTTCAAACAATTCTTTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TGCTCGTGAGCAACCTTGAAGGTGGATGTCCCGCAACTAGAGAGTTCAAACAATTCTTTT 328
Query 239 CAACGTTCAAGTCTTACATGAGCTTTATCAGCTCGGCATCGATATCCTCATCGAAAAACA 298
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 329 CAACGTTCAAGTCTTACATGAGCTTTATCAGCTCAGCATCGATATCCGCATCGAAAAACA 388
Query 299 TTGATGTGGAGATGAATGGGAAATGTGAATTGCTTGCCAAGGCTATGTCTGCATTGACTG 358
| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 389 TCGATGTGGAGATGAATGGGAGATGTGAATTGCTTTCCAAGGCTATGTCTGCATTGACTG 448
Query 359 GAAGTAAAAGCAGCCAATCATCGGAGTTAAAAATTACCATGTTGTCAATGGGAAAGACTT 418
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 449 GAAGCAAAAGCAGCCAATCATCGGAGTTAAAAATGACCATGTTGTCAATGGGAAAGACTT 508
Query 419 TGGTTGAGCAGAAGAGGCAAGGTTCAAGGATAATGTCATTGAAGCAAAAGAAAGAGTTGG 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 509 TGGTTGAGCAGAAGAGGCAAGGTTCAAGGATGATGTCATTGAAGCAAAAGAAAGAGTTGG 568
Query 479 TTGTGGCTATGGTGAAATG 497
|||||||||||||||||||
Sbjct 569 TTGTGGCTATGGTGAAATG 587
Score = 278 bits (150), Expect = 2e-73
Identities = 232/269 (86%), Gaps = 15/269 (6%)
Strand=Plus/Plus
Query 497 GCAAATCCGGAAGTGAATCAAAAACTGAGGCTGGAAGTACCGAAACTAAAACCGGTTCTG 556
||||||||||||||||||| ||| ||||||||| | ||||||||| | | |
Sbjct 770 GCAAATCCGGAAGTGAATC---AAC---GGCTGGAAGCATCGAAACTAACA-C----C-- 816
Query 557 TTGGATCAAAAACTGAGGCTGGTAGCGGAAGTTCTTCTTCGGCCAAGACTAAAGAAACCA 616
|||||||||||||||||||||||| |||||||||||| |||||||| |||||| ||
Sbjct 817 --GGATCAAAAACTGAGGCTGGTAGCAAAAGTTCTTCTTCAGCCAAGACAAAAGAAGTCA 874
Query 617 GCGGTGGAAGTTCTGCTAACACTTACAAAGACACTACTGGTTCATCTTCAGGCGCCAGTC 676
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GCGGTGGAAGTTCTGGTAACACTTACAAAGACACTACTGGTTCATCTTCAGGCGCCAGTC 934
Query 677 CAAGTGGAAGTcccacgcccaccccttctacgcctaccccttctacgcctaccccttcta 736
|||||||||| |||||||||||||||||||| ||||| |||||||| || || |||||||
Sbjct 935 CAAGTGGAAGCCCCACGCCCACCCCTTCTACACCTACTCCTTCTACACCCACTCCTTCTA 994
Query 737 cgcccaccccttcttcttcAACTCCTTCT 765
| ||||| |||||| | | |||||||||
Sbjct 995 CACCCACTCCTTCTACGCCCACTCCTTCT 1023
> AT3G28830.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10831168-10833284 FORWARD LENGTH=1949
Length=1949
Score = 233 bits (126), Expect = 3e-60
Identities = 382/501 (76%), Gaps = 36/501 (7%)
Strand=Plus/Plus
Query 17 AAA-AAATGGCGAAAAATTT-ACTAGCAATATGTCTGGTGTTTA-TGGTTGCATCAAGTG 73
||| ||||||| || ||||| ||||| ||||||||| || ||| | || ||||||||||
Sbjct 60 AAATAAATGGC-AAGAATTTCACTAGGGATATGTCTGATG-TTAGTAGTAGCATCAAGTG 117
Query 74 TGGTCTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGAGGAGGAAGTTTCCCA 133
|| ||||||||| |||||| || ||||| |||| | |||||||| || ||| ||||| |
Sbjct 118 TGATCTATGAAGCGCAAGGAACGTTCTTACTAAACCATTACTTGAAGAAGAATTTTCCAA 177
Query 134 GACGTTGTGTCGACTTTGCCCCTTTTGCTAGCAAAGGTATGTTGATGCTCGTGAGCAACC 193
| || ||| ||| | |||| |||| ||| |||||| | | | | |||| | | |
Sbjct 178 AAAAATGCAACGAGTTTACGCCTTACGCTAACAAGGGTATGATAACGTTGGTGACCGATC 237
Query 194 TTGAAGGT-GGATGTCCCGCAACTAGAGAGTTCAA-ACAATTCTTTTCAAC-GTTCAAGT 250
| |||||| | | |||| || |||| ||||||||| || |||||| | || ||||||||
Sbjct 238 TCGAAGGTAGCA-GTCCGGCCACTACAGAGTTCAAGAC-TTTCTTTAC-ACAGTTCAAGT 294
Query 251 CTTACATGAGCTTT-ATC-AGCTCGGCATCGATATCCTCATCGAAAAACATTGATGTGGA 308
|||||||| |||| ||| || | ||||| ||||| | ||||| |||||| ||
Sbjct 295 CTTACATG-TCTTTCATCGAG-ACAACATCG---GCCTCAACAAAAAATGTTGATGCCGA 349
Query 309 GATGA-ATGGGAAATGTGAATTG-CTTGCCAAGGCTATGTCTGCATTGACTGGAAGTAAA 366
||||| | | ||||||| | | ||| |||||| ||||||||||||| || ||||||
Sbjct 350 GATGACA-GCTAAATGTG-ACGGTCTTTTCAAGGCCATGTCTGCATTGAGTGCTAGTAAA 407
Query 367 AGCAG-CCAAT---C--AT-C--GGAGT-TAAAAATTACCATGTTGTCAATGGGAAAGAC 416
|| | | ||| | || | ||||| | || || ||||||||||| |||||||||||
Sbjct 408 GGC-GTCAAATCAGCGGATGCTGGGAGTATGAAGATGACCATGTTGTCGATGGGAAAGAC 466
Query 417 TTTGGTTGAGCAGAAGAGGCAAGGTTCAAGGATAATGTCATTGAAGCAAAAGAAAGAGTT 476
||||||||||||||||| | || | ||| ||||||| |||||||| |||||||||||||
Sbjct 467 TTTGGTTGAGCAGAAGAAG-AA--TACAAAGATAATGACATTGAAGGAAAAGAAAGAGTT 523
Query 477 GGTTGTGGCTATGGTGAAATG 497
||| | | ||||||||||||
Sbjct 524 GGTCATAGATATGGTGAAATG 544
> AT3G28980.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10993190-10995002 REVERSE LENGTH=1628
Length=1628
Score = 97.1 bits (52), Expect = 5e-19
Identities = 73/82 (89%), Gaps = 6/82 (7%)
Strand=Plus/Plus
Query 1455 GACAGTG-ACATCAACACAAC-AG-ACAGAGCTTAAGCAGACAATCACCAAGTGGGAACA 1511
|||| || ||| | ||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct 1250 GACA-TGCACACCCACACAACAAGTACAGA--TTAAGCAGACAATCACCAAATGGGAACA 1306
Query 1512 AGTCACAACCCAATTCGTTGAG 1533
||||||||||||||||||||||
Sbjct 1307 AGTCACAACCCAATTCGTTGAG 1328
> AT3G28820.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10827647-10829396 FORWARD LENGTH=1372
Length=1372
Score = 91.6 bits (49), Expect = 2e-17
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 1470 ACAACAGACAGAGCTTAAGCA-GACAATCACCAAGTGGGAACAAGTCACAACCCAATTCG 1528
|||||| ||| || ||||| | |||||| || ||||||||||||||||||||||||||||
Sbjct 1237 ACAACAAACACAGATTAAG-ACGACAATTACTAAGTGGGAACAAGTCACAACCCAATTCG 1295
Query 1529 TTGAGACTGCT 1539
|||||||||||
Sbjct 1296 TTGAGACTGCT 1306
> AT3G28810.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10822471-10823941 REVERSE LENGTH=1305
Length=1305
Score = 86.1 bits (46), Expect = 1e-15
Identities = 74/87 (85%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 1455 GACAGTG-ACATCAACACAACAGACAGAGCTTAAG-CAGACAATCACCAAGTGGGAACAA 1512
|||| || ||| || ||||||| ||| || ||||| || ||||| || ||||||||||||
Sbjct 1155 GACA-TGCACACCAGCACAACAAACACAGATTAAGACA-ACAATTACTAAGTGGGAACAA 1212
Query 1513 GTCACAACCCAATTCGTTGAGACTGCT 1539
||||||||||||||||| ||||| |||
Sbjct 1213 GTCACAACCCAATTCGTAGAGACCGCT 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80571874725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5