BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936680

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28857.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   529    7e-150


> AT3G28857.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
family protein | chr3:10855632-10856624 REVERSE LENGTH=739
Length=739

 Score =  529 bits (286),  Expect = 7e-150
 Identities = 307/317 (97%), Gaps = 2/317 (1%)
 Strand=Plus/Plus

Query  4    AAAGTAGAAACAAGAAAATGTCTAACAGAAGATCAAGACAATCTTC-AAGTGCTTCAAGA  62
            |||||| |||||||||||||||||||||||||||||||||| |||| || |||||| || 
Sbjct  295  AAAGTAAAAACAAGAAAATGTCTAACAGAAGATCAAGACAAACTTCGAA-TGCTTCGAGG  353

Query  63   ATCTCCGATGATCAGATGATCGACCTCGTTAGTAAGCTCCGTCAGTTTTTGCCGGAGATT  122
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  ATCTCCGATGACCAGATGATCGACCTCGTTAGTAAGCTCCGTCAGTTTTTGCCGGAGATT  413

Query  123  CAAGAACGGCGTCGTTCTGATAAGGTGTCAGCATCGAAGGTACTACAAGAGACATGTAAC  182
            || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  414  CACGAACGGCGTCGTTCTGATAAGGTGTCAGCATCAAAGGTACTACAAGAGACATGCAAC  473

Query  183  TACATAAGAAAATTGCATAGAGAAGTTGACAATCTCAGTGATCGTTTGTCGCAGCTTCTT  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  TACATAAGAAAATTGCATAGAGAAGTTGACAATCTCAGTGATCGTTTGTCGCAGCTTCTT  533

Query  243  GACTCTGTTGATGAAGATAGCCCTGAAGCTGCCGTGATTAGAAGCTTACTCATGTAACCT  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  534  GACTCTGTTGATGAAGATAGCCCTGAAGCTGCCGTGATTAGAAGCTTACTCATGTAACCT  593

Query  303  TCCAATATTTTTTATTA  319
            |||||||||||||||||
Sbjct  594  TCCAATATTTTTTATTA  610



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14828985955


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5