BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936692
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28940.1 | Symbols: | AIG2-like (avirulence induced gene) f... 832 0.0
AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen... 745 0.0
> AT3G28940.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr3:10968100-10969387 REVERSE LENGTH=810
Length=810
Score = 832 bits (450), Expect = 0.0
Identities = 511/541 (94%), Gaps = 2/541 (0%)
Strand=Plus/Plus
Query 1 TCACAGTGAAATCAAAAACGATGACTAGCTCCAATCAATCTCCGTCGCACGATGTCTTCG 60
|||||||||| |||||||| ||||| |||||| || |||||| ||||||||| || ||||
Sbjct 57 TCACAGTGAACTCAAAAACAATGACAAGCTCCGATAAATCTCTGTCGCACGACGTTTTCG 116
Query 61 TCTACGGCAGTTTCCAAGAACCAGCCGTCGTTAATCTGATCCTCGAATGTTCTCCGGTCA 120
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 117 TCTACGGCAGTTTCCAAGAACCATCCGTCGTCAATCTGATCCTCGAATGTTCTCCGGTCA 176
Query 121 TGGTTTCCGCTCAACTCCACGGCTATCACGTATATAGACTCAAAGGTCGTTTGCATGCTT 180
||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 177 TGGTTCCCGCTCAACTCCACGGCTATCACGTATATAGACTCAAAGGTCGCTTACATGCAT 236
Query 181 GTATCTCTCCTTCTGAGAATGGACTTATCAACGGCAAGATACTAAGTGGATTAACAGATT 240
||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct 237 GTATCTCTCCTTCTGAGAATGGACTAATCAACGGCAAGATACTAACTGGGTTAACAGATT 296
Query 241 CTCAGTTAGAGAATTTAGATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTCAGTTAGAGAATTTAGATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGAAG 356
Query 301 TTGTTTTGACTGATACTTCTGAGAAGAAGCAAGTTGAAACCTATATATGGGCAAACAAGG 360
||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 357 TTGTTTTGACTGATACTTCGGAGAAGAAGCAAGTTGAGACCTATGTATGGGCAAACAAGG 416
Query 361 ATGATCCTAATTTGTATGGAGAATGGGATTTTGAGGAATGGAAGA-GGCTTCATATGGAG 419
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 417 ATGATCCTAATTTGTATGGAGAATGGGATTTTGAGGAATGG-AGACGGCTTCACATGGAT 475
Query 420 AAATTCATAGAGGCGTCGACGAAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGAAGT 479
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 476 AAATTCATCGAGGCGTCGACGAAATTCATCGAGTGGAAGAAGAATCCGGATGGGAGAAGT 535
Query 480 AGGGAAGAGTTTGAGAAGTTTGTATTCGATGATCCTCCCGCTGAGGCATGAAGAAGTTGT 539
||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 536 AGGGAAGAGTTTGAGAAGTTTGTATTCGATGATCCTCCCACTGCGGCTTGAAGAAGTTGT 595
Query 540 C 540
|
Sbjct 596 C 596
> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene)
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797
Score = 745 bits (403), Expect = 0.0
Identities = 509/559 (91%), Gaps = 12/559 (2%)
Strand=Plus/Plus
Query 1 TCACAGTG-AAATCAAAAACGATGACTAGCTCCAATCAATCTCCGTCGCACGATGTCTTC 59
|||||||| |||| |||||| ||||| |||||| |||||||||| |||||||| ||||||
Sbjct 61 TCACAGTGAAAAT-AAAAACAATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTC 119
Query 60 GTCTACGGCAGTTTCCAAGAACCAGCCGTCGTTAATCTGATCCTCGAATGTTCTCCGGTC 119
||||||||||||||||||||||||||||| |||||| | || ||||||||| ||||||||
Sbjct 120 GTCTACGGCAGTTTCCAAGAACCAGCCGTTGTTAATTTAATTCTCGAATGTGCTCCGGTC 179
Query 120 ATGGTTTCCGCTCAACTCCACGGCTATCACGTATATAGACTCAAAGGTCGTTTGCATGCT 179
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct 180 ATGGTTTCCGCTCAACTCCACGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCA 239
Query 180 TGTATCTCTCCTTCTGAGAATGGACTT-ATCAACGGCAAGATACTAAGTGGATTAACAGA 238
||||| |||||||| || |||||| || ||||| ||||||||||||| ||||||||||||
Sbjct 240 TGTATTTCTCCTTCCGACAATGGA-TTAATCAATGGCAAGATACTAACTGGATTAACAGA 298
Query 239 TTCTCAGTTAGAGAATTTAGATATGATTGAAGGAAGTGAATATGTGAGGAAGACTGTTGA 298
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 TTCTCAGTTAGAGAGTTTAGATATGATTGAAGGAACTGAATATGTGAGGAAGACTGTTGA 358
Query 299 AGTTGTTTTGACTGATACTTCTG-AGAAGAAGCAAGTTGAAACCTATA-TATGGGCAAAC 356
|||||||||||||||||||| || ||||||||||||||||||| || |||||||||||
Sbjct 359 AGTTGTTTTGACTGATACTT-TGGAGAAGAAGCAAGTTGAAACA-ATTGTATGGGCAAAC 416
Query 357 AAGGATGATCCTAATTTGTATGGAGAATGGGATTTTGAGGAATGGAAGAGGCTTCATATG 416
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 417 AAGGATGATCCTAATATGTATGGAGAATGGGATTTCGAGGAATGGAAGAGGCTTCATATG 476
Query 417 GAGAAATTCATAGAGGCGTCGACGAAGTTCATGGAGTGGAAGAAGAATCCGGATGGGAGA 476
|||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 477 GAGAAATTTATAGAGGCGGCGACGAAATTCATGGAGTGGAAGAAGAATCCGAATGGGAGA 536
Query 477 AGTAGGGAAGAGTTTGAGAAGTTTGTATTCGATGATCCT-C-CCG-CTGAGGCATGAAGA 533
||||||||||||||||||||||||||| |||||| || | ||| || ||| ||||||
Sbjct 537 AGTAGGGAAGAGTTTGAGAAGTTTGTACAAGATGATTCTTCTCCGGCTTCGGCTTGAAGA 596
Query 534 AGTTGTCTGCGTTT-ATCT 551
|||||| ||||||| ||||
Sbjct 597 AGTTGTTTGCGTTTTATCT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5