BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936693
Length=542
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28950.1 | Symbols: | AIG2-like (avirulence induced gene) f... 808 0.0
AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen... 145 5e-34
AT4G31310.1 | Symbols: | AIG2-like (avirulence induced gene) f... 97.1 1e-19
> AT3G28950.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr3:10976108-10977492 REVERSE LENGTH=871
Length=871
Score = 808 bits (437), Expect = 0.0
Identities = 501/532 (94%), Gaps = 4/532 (1%)
Strand=Plus/Plus
Query 13 AGAAGAAGATGACTAGCTCTGATCCTTC-ATCTCACAACATCTTCGTCTACGGCAGCATT 71
|||| |||||||| ||||||||||| || |||||||||| ||||||||||||| ||||||
Sbjct 115 AGAAAAAGATGACCAGCTCTGATCC-TCAATCTCACAACGTCTTCGTCTACGGTAGCATT 173
Query 72 CTAGAGCCTGCCGTAGCCGCCGTGATCCTTGATCGCACCGCCGACACAGTCCCCGCCGTT 131
||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 174 CTAGAACCCGCCGTCGCCGCCGTGATCCTGGATCGCACAGCCGATACAGTCCCCGCCGTT 233
Query 132 CTTCATAGCTATCACAGATATAAACTCAAAGGACTTCCATATCCATGTATTGTTCCGTCT 191
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 234 CTCCATGGCTATCACAGATATAAACTCAAAGGACTTCCATATCCATGTATTGTTTCTTCT 293
Query 192 GAATCAGGAAAAGTCAACGGAAAGGTAATAACTGGAGTGTCGGATGCTGAGTTAAATAAT 251
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 294 GATTCTGGAAAAGTCAACGGAAAGGTTATAACTGGAGTGTCTGATGCTGAGTTAAATAAT 353
Query 252 TTCGATGTGATTGAAGGTAATGATTATGAGAGAGTAACAGTTGAAGTTGTAAGAATGGAT 311
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 TTCGATGTGATTGAAGGTAATGATTATGAGAGAGTAACTGTTGAAGTTGTAAGAATGGAT 413
Query 312 AATTCTGAGAAGATGAAAGTTGAAACTTATGTTTGGGTTAATAAAGATGATCCTAGAATG 371
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AATTCTGAGAAGGTGAAAGTTGAAACTTATGTTTGGGTTAATAAAGATGATCCTAGAATG 473
Query 372 TATGGAGAATGGGATTTCGAGGAATGGAGAGTGATTCACGCGGAGAAATTCGTAGAGACA 431
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 474 TATGGAGAATGGGATTTCGAGGAATGGAGAGTGGTTCACGCGGAGAAATTCGTGGAGACT 533
Query 432 TTTAGAAAGTTGTTGGAATGGAACAAGAATCCAAATGGGAAGAGCATGGAGGAGGCTGTA 491
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTTAGAAAAATGTTGGAATGGAACAAGAATCCAAATGGGAAGAGCATGGAGGAGGCTGTA 593
Query 492 GGACCATTATTATCGTC-GGAGGATTGATTCTTGATGAGCTTGGCTAATCTT 542
||| ||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 594 GGATCATTATTATCGTCAGG-GGATTAATTCTTGATGAGCTTGGCTAATCTT 644
> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene)
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797
Score = 145 bits (78), Expect = 5e-34
Identities = 212/275 (77%), Gaps = 16/275 (6%)
Strand=Plus/Plus
Query 205 TCAACGGAAAGGTAATAACTGGAGTGTCGGATGCTGAGTTAAATAATTTCGATGTGATTG 264
|||| || ||| || |||||||| | | ||| || ||||| | | ||| ||| ||||||
Sbjct 268 TCAATGGCAAGATACTAACTGGATTAACAGATTCTCAGTTAGAGAGTTTAGATATGATTG 327
Query 265 AAGGTAA-TGATTATGAGAGAGTA-ACAGTTGAAGTTG-TAAGAATGGATAATTCT-GAG 320
|||| || ||| |||| ||| | | || |||||||||| | || | |||| || | |||
Sbjct 328 AAGG-AACTGAATATGTGAG-GAAGACTGTTGAAGTTGTTTTGACT-GATACTT-TGGAG 383
Query 321 AAGATGAAAGTTGAAACTTA-TGTTTGGGTTAATAAAGATGATCCTAGA-ATGTATGGAG 378
|||| | |||||||||| | ||| |||| || || |||||||||| | ||||||||||
Sbjct 384 AAGAAGCAAGTTGAAAC-AATTGTATGGGCAAACAAGGATGATCCTA-ATATGTATGGAG 441
Query 379 AATGGGATTTCGAGGAATGGA-GAGTGATTCACGCGGAGAAATTCGTAGAGACATTTA-G 436
||||||||||||||||||||| ||| | |||| ||||||||| ||||| | | |
Sbjct 442 AATGGGATTTCGAGGAATGGAAGAG-GCTTCATATGGAGAAATTTATAGAGGCGGCGACG 500
Query 437 AAAGTTGTTGGAATGGAACAAGAATCCAAATGGGA 471
||| || |||| ||||| |||||||| |||||||
Sbjct 501 AAA-TTCATGGAGTGGAAGAAGAATCCGAATGGGA 534
> AT4G31310.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr4:15191325-15192596 FORWARD LENGTH=778
Length=778
Score = 97.1 bits (52), Expect = 1e-19
Identities = 236/322 (73%), Gaps = 24/322 (7%)
Strand=Plus/Plus
Query 92 CGTGATCCTTGATCGC-ACCGCCGACACA-GTCCCCGCCGTTCT-TCATAGCTATCACAG 148
|||| | ||| ||||| || | ||| || ||| ||||||| || || ||| ||||||
Sbjct 69 CGTGCTTCTTAATCGCGTCC-CTGAC-CATGTCTCCGCCGTACTCTC-CGGCTTTCACAG 125
Query 149 ATATAAACTCAAAGGAC-T-TCCATATCCATGTATTGTTCC-GTCTGAATCAGGAAAAGT 205
| || ||||||||| | | | | |||||| ||| | || | | | | | ||||||||
Sbjct 126 GTTTAGACTCAAAGGCCGTGT-C-TATCCAACAATTCTACCGGACGGTA-CCGGAAAAGT 182
Query 206 CAACGGAAAGGTAATAACTGG-AGTGTCGGATGCTGAGTTAAATAAT-TTCGATGTGATT 263
|||||||||||| ||| || | | | |||| ||| | || || || |||| | ||
Sbjct 183 CAACGGAAAGGTGCTAAAGGGCA-TAACAGATGATGAACTGAA-GATGTTAGATGAGTTT 240
Query 264 GAAGGTAATGATTATGAGAGAGTA-ACAGTTGAAGT--TGTAAGAATGGATAATTCTGAG 320
|||| | ||| ||||| ||| | || |||||||| || | | ||||| ||| |||
Sbjct 241 GAAGATGTTGAATATGACAGA-AAGACTGTTGAAGTAATG-CTG-ACGGATACTTCAGAG 297
Query 321 AAGATGAAAGTTGAAACTTATGTTTGGGTTAATAAAGATGATCCTAGA-ATGTATGGAGA 379
||| || |||| ||||| ||||| ||| || ||||||||||| || | ||||||||
Sbjct 298 AAGCTGCAAGTCGAAACATATGTATGGAAGAACAAAGATGATCC-GGATCTTTATGGAGA 356
Query 380 ATGGGATTTCGAGGAATGGAGA 401
||||||||||||||||||||||
Sbjct 357 ATGGGATTTCGAGGAATGGAGA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25971053999
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5