BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936695

Length=913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01380.1 | Symbols:  | plastocyanin-like domain-containing p...   381    6e-105
  AT3G28958.1 | Symbols:  | Cupredoxin superfamily protein | chr3...   115    7e-25 


> AT4G01380.1 | Symbols:  | plastocyanin-like domain-containing 
protein | chr4:569148-570076 REVERSE LENGTH=633
Length=633

 Score =  381 bits (206),  Expect = 6e-105
 Identities = 346/410 (84%), Gaps = 23/410 (6%)
 Strand=Plus/Plus

Query  491  CTCTAAGGGGTGGAGTGTTCCTG-AAGAGACCGACTTTTATTACAAG-TGGGCG-GAGCA  547
            ||| ||||| ||||||||||| | |||| |   ||||||||||| || | || | ||| |
Sbjct  228  CTCCAAGGGATGGAGTGTTCC-GCAAGAAAGTTACTTTTATTAC-AGAT-GGAGTGAGAA  284

Query  548  GA-GTCACTTTGATATTGGAGACAAACTACTTTTTGAATACGGCAACGAAGTCAACGACG  606
            || | || |||   || |||||||  || ||||| ||||||| |||||||||||||||||
Sbjct  285  GACG-CAGTTTCCGATCGGAGACAGTCTTCTTTTCGAATACGACAACGAAGTCAACGACG  343

Query  607  TC-TACGAGATCAGCGGAGACCTTGAATTCTTATCCTG-TGACCGGATTTCTCCAATATC  664
            || || ||||||||||| |||||||||||| ||||||| | ||| |||||||||  || |
Sbjct  344  TCTTA-GAGATCAGCGGGGACCTTGAATTCATATCCTGCT-ACCCGATTTCTCCCGTAGC  401

Query  665  CGTGCACAAGACAGGACACGATCTCGTCACACTCACCA-AACCAGGAGTCCACTACTTCA  723
            |||||||| |||||| |||||||||||||| |||| || ||||||||||||| || ||||
Sbjct  402  CGTGCACATGACAGGCCACGATCTCGTCACGCTCA-CAGAACCAGGAGTCCATTATTTCA  460

Query  724  TTAGCTCAAAGA---CAGGTCACTGTGAGGCTGGGCTTAAACTACGAGTCGTGGTCGGAC  780
            ||||||| ||||   ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct  461  TTAGCTCTAAGACTCCAGGTCACTGTTACGCTGGGCTTAAGCTACGAGTCGTGGTCGGAC  520

Query  781  CACTCACCAAACCCGTAACTGTCCCCAATGTTCCTG-CGAAGCAGATGGAGTTGACACTT  839
            ||||||||||| ||||| |||||||||||||||| | ||||| |||| |||||| |||||
Sbjct  521  CACTCACCAAAGCCGTACCTGTCCCCAATGTTCC-GACGAAGAAGATAGAGTTGTCACTT  579

Query  840  ATGGACCAG-TACAACAGATGGTTACGCTCCTTCAGG-CCTCAACCTCAT  887
            ||||||| | | |||||||||||||||| ||||| || |||||||| |||
Sbjct  580  ATGGACC-GCTTCAACAGATGGTTACGCACCTTC-GGACCTCAACCCCAT  627


> AT3G28958.1 | Symbols:  | Cupredoxin superfamily protein | chr3:10982706-10983532 
FORWARD LENGTH=528
Length=528

 Score =  115 bits (62),  Expect = 7e-25
 Identities = 106/127 (83%), Gaps = 4/127 (3%)
 Strand=Plus/Plus

Query  613  AGATCAGCGGAGACCTTGAATTCTTATCCTGTGACCGGATTTCTCCAATATCCG-TGCAC  671
            |||||||| |||||||||||||| |||| || ||||  | ||||||  |   || |||||
Sbjct  305  AGATCAGCCGAGACCTTGAATTCATATCATGCGACCCAACTTCTCCCGT-GGCGATGCAC  363

Query  672  AAGACAGGACACGATCTCGTCACA-CTCACCAAACCAGGAGTCCACTACTTCATTAGCTC  730
            |||||||| || ||||| || | | ||||||||||||||||||||||||||||||| |||
Sbjct  364  AAGACAGGGCATGATCTTGTGA-AGCTCACCAAACCAGGAGTCCACTACTTCATTACCTC  422

Query  731  AAAGACA  737
            || ||||
Sbjct  423  AATGACA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44607922536


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5