BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936700
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28990.1 | Symbols: | Plant protein 1589 of unknown functio... 315 2e-85
> AT3G28990.1 | Symbols: | Plant protein 1589 of unknown function
| chr3:11002351-11003072 REVERSE LENGTH=293
Length=293
Score = 315 bits (170), Expect = 2e-85
Identities = 206/223 (92%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 30 GTGCAACACATGATAGAGACATGTTTGACCTTTAACATGAGCAAAGAGGAATGCATGGAA 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GTGCAACACATGATAGAGACATGTTTGACCTTTAACATGAGCAAAGAGGAATGCATGGAA 122
Query 90 GCTCTCTCAAAGAATGCAAACATCAATCCCATCATCACGTCCTCTGTGTGGAAGGAGCTT 149
||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 123 GCTCTCTCAGAGAATGCAAACATCAATCCCATCATCACGTCCACTGTTTGGAAGGAGCTG 182
Query 150 GTCAAAGAGAACAAGGACTTCTTCGAGGCGTACGAGCAGAAGCTTGTGAAAAATGAA-CA 208
|| |||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||| ||
Sbjct 183 GTTAAAGAGAACAAGGACTTCTTTGAGACGTACGAGCAGAAGCTTATGAAAAAGGAATCA 242
Query 209 AATTTCGGAGGAAGAAACAAACCAGATGA-TTCAGAACATCAT 250
| | |||||||| || |||||||| || | |||||||||||||
Sbjct 243 A-TGTCGGAGGAGGAGACAAACCA-ATTAATTCAGAACATCAT 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13471756732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5