BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936703
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29020.2 | Symbols: MYB110 | myb domain protein 110 | chr3:1... 1399 0.0
AT5G39700.1 | Symbols: MYB89, AtMYB89 | myb domain protein 89 |... 84.2 2e-15
> AT3G29020.2 | Symbols: MYB110 | myb domain protein 110 | chr3:11008117-11009456
REVERSE LENGTH=1071
Length=1071
Score = 1399 bits (757), Expect = 0.0
Identities = 904/970 (93%), Gaps = 29/970 (3%)
Strand=Plus/Plus
Query 4 GTTATAG-A-AGAGACTAACATGGAGATGGATTTTTCATGTTTCCAAGAATACCCTTTTG 61
||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 18 GTTATAGAAGAGAGACTAACATGAAGATGGATTTTTCATGTTTCCAAGAATACCCTTTTG 77
Query 62 AGTTCCATTGCAGAGG---AACATTTAATGGGTTTGGAGAAAACAATGCAGTG--T---- 112
|||| ||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 78 AGTTTCATTGCAGAGGAACAACATTTAATGGGTTTAGAGAAAACAATGCAGTGTCTGAAA 137
Query 113 C--T-GAAGAGTTCTGTAATAAACGAAGGATGCAGAAGAAGAGTGATGACTTGGagaaga 169
| | |||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 138 CAGTAGAAGAGTTCTGTAATAAAAGAAGGATGCAGAAGAAGAGTGATGA-TT--TGAAGA 194
Query 170 agaagaagaagaagaaACAGAGTGGTTCTAGGGTTTGTAGTAGAGGACATTGGAGGATTT 229
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 195 CTAAGAAGAAGAAGAAACAGAGTGTTTCTAGGGTTTGTAGTAGAGGACATTGGAGGATCT 254
Query 230 CTGAAGATTCTCAGCTTATGGAGCTTGTTTCGGTTTACGGTCCTCAAAACTGGAACCACA 289
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CTGAAGATACTCAGCTTATGGAGCTTGTTTCGGTTTACGGTCCTCAAAACTGGAACCACA 314
Query 290 TTGCAGAGAATATGCAAGGAAGAACAGGCAAGAGTTGCAGATTGAGGTGGTTTAACCAGT 349
||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 315 TTGCAGAGAGTATGCAAGGAAGAACAGGAAAGAGCTGCAGATTGAGGTGGTTTAACCAGT 374
Query 350 TAGATCCGAGGATTAACAAGAGAGCTTTCAGTGATGAAGAAGAAGAGAGACTACTTGCAG 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 375 TAGATCCGAGGATTAACAAGAGAGCTTTCAGTGATGAAGAAGAAGAGAGACTACTTGCTG 434
Query 410 CTCATAGAGCTTTTGGTAACAAATGGGCTATGATTGCTAAGCTTTTCAATGGAAGAACAG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CTCATAGAGCTTTTGGTAACAAATGGGCTATGATTGCTAAGCTTTTCAATGGAAGAACAG 494
Query 470 ACAATGCTTTAAAGAATCACTGGCATGTCCTCATGGCAAGAAAGATGAGACAGCAATCAA 529
| ||||| || |||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 495 ATAATGCCTTGAAGAATCATTGGCATGTTCTCATGGCAAGGAAGATGAGACAGCAATCAA 554
Query 530 CTTCTTACGTCCAAAGATTCAATGGGTCTGCTCATAAACCTAACACAGATCAGAAAATCT 589
|||||||||||||||||||||||| ||||||||| || ||||||||||||| |||||||
Sbjct 555 GTTCTTACGTCCAAAGATTCAATGGTTCTGCTCATGAATCTAACACAGATCACAAAATCT 614
Query 590 TCAATCTTTCTCCTGGTAATGTAGATGATGATGAAGATATGGATCTGAAAAAGTGCAGCT 649
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 615 TCAATCTTTCTCCTGGTAATGTAGATGATGATGAAGATGTGAATCTGAAAAAGTGCAGCT 674
Query 650 GGAAAATGCTAAAAGAGGGAACTACTAACCTGAAAGCTCAGTATCTCCAAGAAGAATATT 709
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGGAAATGCTAAAAGAGGGAACTACTAACCTGAAAGCTCAGTATCTCCAAGAAGAATATA 734
Query 710 GTTCTTCACGCATGCCGATGCAGGGTCCACATCATCCCTACTCAACCTTCCCTGCAGATT 769
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 735 GTTCTTCACGCATGCCGATGCAGGGTCCACATCATCACTACTCAACCTTCCCTGCAGATT 794
Query 770 CCTTGGCACTGACACTGCATGTCTCCATCCAGGAACcatcatcatcatcatcatcttcgt 829
||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 795 CCTTGGCACTGACACTGCATGTCTCCATCCAGGAACCATCATCATCATC---------GT 845
Query 830 cattatcactgccatcatcatcaAG---TGCACAACATACAATGGTGACCAGATATTTTG 886
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 846 CATTATCACTGCCATCATCATCAACAACTGGAGAACATACAATGGTGACCAGATATTTTG 905
Query 887 AGACCATTAAACCTCCAACATTTATAGATTTTCTAGGAGTTGGTCACTAAAACTCCAACA 946
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 906 AGACCATTAAACCTCCAGCATTTATAGATTTTCTAGGAGTTGGTCACTAAAGCTCTAACA 965
Query 947 TGTAGAGTGG 956
| ||||||||
Sbjct 966 TTTAGAGTGG 975
> AT5G39700.1 | Symbols: MYB89, AtMYB89 | myb domain protein 89
| chr5:15893761-15894424 REVERSE LENGTH=573
Length=573
Score = 84.2 bits (45), Expect = 2e-15
Identities = 66/75 (88%), Gaps = 5/75 (7%)
Strand=Plus/Plus
Query 37 TCATG-TTTCCAAGAATA-CCCTTTTGA-GTTCCATTGCAGAGGAACATTTAATGGGTTT 93
||||| ||| ||| |||| ||||| ||| ||| ||||||||||| ||||||||||||||
Sbjct 45 TCATGTTTTTCAA-AATACCCCTTGTGATGTTTCATTGCAGAGG-CCATTTAATGGGTTT 102
Query 94 GGAGAAAACAATGCA 108
|||||||||||||||
Sbjct 103 GGAGAAAACAATGCA 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5