BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936712 Length=995 Score E Sequences producing significant alignments: (Bits) Value AT3G29090.1 | Symbols: PME31, ATPME31 | pectin methylesterase 3... 1500 0.0 > AT3G29090.1 | Symbols: PME31, ATPME31 | pectin methylesterase 31 | chr3:11073703-11075478 FORWARD LENGTH=1198 Length=1198 Score = 1500 bits (812), Expect = 0.0 Identities = 935/995 (94%), Gaps = 5/995 (1%) Strand=Plus/Plus Query 5 ACTAGGGGTTTACAAGTATGGCGACGACTCGAATAGTGAGGGTTGCGCAAGATGGTTCCG 64 ||||||| ||||||| |||||| ||||||||||| || |||||| ||||||||||||| | Sbjct 85 ACTAGGGTTTTACAACTATGGCAACGACTCGAATGGTTAGGGTTTCGCAAGATGGTTCGG 144 Query 65 GAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGTAGGA 124 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 145 GAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGCAGAA 204 Query 125 CTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCAGTTTACGTACCCAAGAGGAAAA 184 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||| | Sbjct 205 CTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCTGTGTATGTACCCAAGAGGAAGA 264 Query 185 ACTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTTCTT-ACTTGGAACAATACA 243 | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 265 ATTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTT-TTGACTTGGAACAATACA 323 Query 244 GCTTCCAAGATTGAGCATCATCAGGCGGCTAGAGTTATTGGGACTGGTACGTTTGGGTGT 303 |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||| Sbjct 324 GCTTCCAAGATTGAGCATCACCAGGCGTCTAGAGTCATTGGGACTGGTACGTTTGGTTGT 383 Query 304 GGGAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCT 363 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 GGTAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCT 443 Query 364 GCTCCTGAGGGATCAGGGCAAGCTGTTGCGATACGAGTCACTGCAGACCGTTGTGCCTTT 423 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 444 GCTCCTGAGGGATCAGGGCAAGCTGTGGCGATACGAGTCACTGCAGACCGTTGCGCCTTT 503 Query 424 TATAATTGTCGGTTTCTCGGCTGGCAGGATACATTGTATTTACATCATGGGAAACAATAT 483 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 504 TATAATTGTCGATTTCTCGGTTGGCAGGATACATTGTATTTACATCATGGGAAACAATAT 563 Query 484 TTGAAAGACTGCTACGTCGAGGGAAGCGTGGATTTCATATTTGGAAACAGCACTGCACTC 543 ||||||||||| ||| |||||||||| ||||||||||||||||||||||| || || ||| Sbjct 564 TTGAAAGACTGTTACATCGAGGGAAGTGTGGATTTCATATTTGGAAACAGTACCGCTCTC 623 Query 544 TTGGAACATTGCCATATCCATTGCAAATCTCAGGGTTTTATAACAGCACAAAGCAGAAAA 603 |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||| Sbjct 624 TTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAA 683 Query 604 TCATCTCAAGAATCTACTGGTTACGTATTCTTAAGATGTGTGATTACAGGTAATGGTCAG 663 || ||||| |||||||||||||| |||||||||||||||||||| || |||||||||||| Sbjct 684 TCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGATGTGTGATCACGGGTAATGGTCAG 743 Query 664 AGTGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTGGTCCTTGCTTAC 723 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 744 AGCGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTAGTCCTTGCTTAC 803 Query 724 ACATACATGGATGCGTGTATCAGAAATGTCGGTTGGCATAACTGGGGAAACGCAGAGAAC 783 || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 804 ACTTACATGGACGCGTGTATCAGAAATGTGGGTTGGCATAACTGGGGAAACGCAGAGAAC 863 Query 784 GAGAGAAGTGCTTGCTTTTATGAGTACAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAA 843 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 864 GAGAGAAGTGCTTGCTTTTATGAGTATAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAA 923 Query 844 CGGGTTCCGTGGTCGAGAGAACTAATGGATGAAGAAGCCGGACACTTTGTGCATCACAGT 903 || |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||| Sbjct 924 CGTGTTCCGTGGTCGAGAGAACTGATGGATGACGAAGCTGGACACTTTGTGCATCATAGT 983 Query 904 TTTGTGGATCCAGAACAGGACCGCCCTTGGTTGTGTCTAAGGATGGGTGTGAAAACACCA 963 ||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 984 TTTGTAGATCCTGAACAGGACCGGCCTTGGTTGTGTCTAAGAATGGGTGTGAAAACACCA 1043 Query 964 TATTCTGCGTAGAGTACTGAAAAA---TGTTGTAA 995 ||||| || ||||||||||||||| |||||||| Sbjct 1044 TATTCGGCTTAGAGTACTGAAAAAAAATGTTGTAA 1078 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48727122590 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5