BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936712
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29090.1 | Symbols: PME31, ATPME31 | pectin methylesterase 3... 1500 0.0
> AT3G29090.1 | Symbols: PME31, ATPME31 | pectin methylesterase
31 | chr3:11073703-11075478 FORWARD LENGTH=1198
Length=1198
Score = 1500 bits (812), Expect = 0.0
Identities = 935/995 (94%), Gaps = 5/995 (1%)
Strand=Plus/Plus
Query 5 ACTAGGGGTTTACAAGTATGGCGACGACTCGAATAGTGAGGGTTGCGCAAGATGGTTCCG 64
||||||| ||||||| |||||| ||||||||||| || |||||| ||||||||||||| |
Sbjct 85 ACTAGGGTTTTACAACTATGGCAACGACTCGAATGGTTAGGGTTTCGCAAGATGGTTCGG 144
Query 65 GAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGTAGGA 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 145 GAGATTACTGCTCTGTTCAAGACGCAATTGATTCGGTGCCTTTAGGTAACACTTGCAGAA 204
Query 125 CTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCAGTTTACGTACCCAAGAGGAAAA 184
||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 205 CTGTGATTCGTCTCTCACCTGGGATTTATCGGCAACCTGTGTATGTACCCAAGAGGAAGA 264
Query 185 ACTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTTCTT-ACTTGGAACAATACA 243
| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 265 ATTTCATTACCTTCGCCGGAATCTCACCGGAGATCACGGTT-TTGACTTGGAACAATACA 323
Query 244 GCTTCCAAGATTGAGCATCATCAGGCGGCTAGAGTTATTGGGACTGGTACGTTTGGGTGT 303
|||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||
Sbjct 324 GCTTCCAAGATTGAGCATCACCAGGCGTCTAGAGTCATTGGGACTGGTACGTTTGGTTGT 383
Query 304 GGGAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCT 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GGTAGTGTTATTGTTGAAGGTGAAGATTTTATTGCAGAGAACATTACTTTTGAGAACTCT 443
Query 364 GCTCCTGAGGGATCAGGGCAAGCTGTTGCGATACGAGTCACTGCAGACCGTTGTGCCTTT 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 444 GCTCCTGAGGGATCAGGGCAAGCTGTGGCGATACGAGTCACTGCAGACCGTTGCGCCTTT 503
Query 424 TATAATTGTCGGTTTCTCGGCTGGCAGGATACATTGTATTTACATCATGGGAAACAATAT 483
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 504 TATAATTGTCGATTTCTCGGTTGGCAGGATACATTGTATTTACATCATGGGAAACAATAT 563
Query 484 TTGAAAGACTGCTACGTCGAGGGAAGCGTGGATTTCATATTTGGAAACAGCACTGCACTC 543
||||||||||| ||| |||||||||| ||||||||||||||||||||||| || || |||
Sbjct 564 TTGAAAGACTGTTACATCGAGGGAAGTGTGGATTTCATATTTGGAAACAGTACCGCTCTC 623
Query 544 TTGGAACATTGCCATATCCATTGCAAATCTCAGGGTTTTATAACAGCACAAAGCAGAAAA 603
|||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 624 TTGGAACACTGCCATATCCACTGCAAATCTCAGGGGTTTATAACAGCACAAAGCCGAAAA 683
Query 604 TCATCTCAAGAATCTACTGGTTACGTATTCTTAAGATGTGTGATTACAGGTAATGGTCAG 663
|| ||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 684 TCGTCTCAGGAATCTACTGGTTATGTATTCTTAAGATGTGTGATCACGGGTAATGGTCAG 743
Query 664 AGTGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTGGTCCTTGCTTAC 723
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 744 AGCGGGTATATGTATCTCGGAAGGCCATGGGGACCATTTGGGAGGGTAGTCCTTGCTTAC 803
Query 724 ACATACATGGATGCGTGTATCAGAAATGTCGGTTGGCATAACTGGGGAAACGCAGAGAAC 783
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 804 ACTTACATGGACGCGTGTATCAGAAATGTGGGTTGGCATAACTGGGGAAACGCAGAGAAC 863
Query 784 GAGAGAAGTGCTTGCTTTTATGAGTACAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAA 843
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 864 GAGAGAAGTGCTTGCTTTTATGAGTATAGGTGCTTTGGTCCGGGTAGCTGTTCGTCTGAA 923
Query 844 CGGGTTCCGTGGTCGAGAGAACTAATGGATGAAGAAGCCGGACACTTTGTGCATCACAGT 903
|| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 924 CGTGTTCCGTGGTCGAGAGAACTGATGGATGACGAAGCTGGACACTTTGTGCATCATAGT 983
Query 904 TTTGTGGATCCAGAACAGGACCGCCCTTGGTTGTGTCTAAGGATGGGTGTGAAAACACCA 963
||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 984 TTTGTAGATCCTGAACAGGACCGGCCTTGGTTGTGTCTAAGAATGGGTGTGAAAACACCA 1043
Query 964 TATTCTGCGTAGAGTACTGAAAAA---TGTTGTAA 995
||||| || ||||||||||||||| ||||||||
Sbjct 1044 TATTCGGCTTAGAGTACTGAAAAAAAATGTTGTAA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5