BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936713
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-sna... 804 0.0
> AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-snare
13 | chr3:11075836-11077540 REVERSE LENGTH=1351
Length=1351
Score = 804 bits (435), Expect = 0.0
Identities = 504/538 (94%), Gaps = 2/538 (0%)
Strand=Plus/Plus
Query 173 GGTTAAGAAAATGGACCTCGAGGCGAGAAGCCTTCCACCCAATGTTAAATCCAGCCTCCT 232
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 758 GGTTAAGAAAATGGACCTCGAGGCAAGAAACCTTCCACCCAATGTTAAATCCAGTCTCCT 817
Query 233 TGTCAAATTAAGGGAATACAAATCTGATCTGAACAATTTCAAGACTGAAGTGAAGAGAAT 292
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 818 TGTCAAATTAAGGGAATACAAATCTGATCTTAACAATTTCAAGACGGAAGTGAAGAGAAT 877
Query 293 CACATCTGGAAACTTAAATGCTAATGCTCGAGATGAGTTACTAGAAGCTGGTATGGCTGA 352
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 878 CACATCTGGAAACTTAAACGCTACTGCTCGAGATGAGTTACTAGAAGCTGGTATGGCTGA 937
Query 353 CAAATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGTTGTCAACAGACCGTTTAGG 412
|| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 938 CACATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACAGACCATTTAGG 997
Query 413 CCGAACCACAGACAGAATCAAGGACAGTCGGAGAACAATGCTGGAGACTGAAGAGATTGG 472
|||||||||||||||||||||||||||| ||||||| || |||||||| |||||| ||||
Sbjct 998 CCGAACCACAGACAGAATCAAGGACAGTAGGAGAACGATACTGGAGACAGAAGAGCTTGG 1057
Query 473 TGTTTCAATCCTTCAGGATTTGCACGGGCAGAGAGAGTCTCTCTTACGCGCCCATGAAAC 532
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1058 TGTTTCAATCCTTCAGGATTTGCACGGGCAGAGACAGTCTCTCTTACGGGCCCATGAAAC 1117
Query 533 GCTTCATGGAGTTGATGATAACGTGGGAAAGAGCAAGAAAATATTGACTGCGATGACAAG 592
|||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||| ||
Sbjct 1118 GCTTCATGGAGTCGATGATAACGTCGGAAAGAGCAAGAAAATATTGACAACAATGACTAG 1177
Query 593 GAGGATGAATAGAAACAAATGGACTATCGGTGCGATCATCACAGTCCTTGTCCTCGCTAT 652
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1178 GAGAATGAATAGAAACAAATGGACCATCGGTGCGATAATCACAGTCCTTGTCCTCGCCAT 1237
Query 653 TATCTTGATCTTATATTTCAAACTCACCAGGTGAAGCCTCT--CTCTTCACCTACCTG 708
|||||| ||||| || ||||||||||||||||||||||| | |||||||||| ||||
Sbjct 1238 TATCTTTATCTTGTACTTCAAACTCACCAGGTGAAGCCTTTTTCTCTTCACCTGCCTG 1295
Score = 189 bits (102), Expect = 3e-47
Identities = 110/114 (96%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 AGTAGTGGTTTCTGAGAACGATGAGTCAAGTTTTCGAAAGATATGAGCGACAATACTGTG 60
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 129 AGTAGTGGTTTCTGGGAACGATGAGTCAAGGTTTCGAAAGATATGAGAGACAATACTGTG 188
Query 61 AGATTTCTGCAAATCTCTCAAAGAAATGTACTTCAGCTAATGCTCTTGATGGAG 114
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 189 AGATTTCTGCAAATCTCTCAAAGAAATGTACTTCAGCTATTGCTCTTGATGGAG 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5