BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936715

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29105.1 | Symbols:  | pseudogene, nonspecific lipid transfe...   435    2e-121


> AT3G29105.1 | Symbols:  | pseudogene, nonspecific lipid transfer 
protein, similar to nonspecific lipid transfer protein GB:AAB47967 
(Hordeum vulgare); blastp match of 44% identity and 
8.4e-18 P-value to SP|Q43681|NLTP_VIGUN Probable nonspecific 
lipid-transfer protein AKCS9 precursor (LTP). (Cowpea) {Vigna 
unguiculata} | chr3:11081010-11081545 FORWARD LENGTH=536
Length=536

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 287/313 (92%), Gaps = 0/313 (0%)
 Strand=Plus/Plus

Query  2    TGGAATTGAAGAAAAAGTCAAGATATGAAGTTTACAACACTAGCTTGCATCACATTTATT  61
            ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct  1    TGGAATTGAAGAAAAAGTCAAGACATGAAGTTTACAACATTAGTTTGCATCACATTTATT  60

Query  62   GTAGTACACGTTTCGTTTCTGGCTCCGGTCAATTCAGTGAATCCAGCTTGCGACAAAATT  121
            ||||| | |||||| ||| |||||||  ||||||||||||||| ||||||  ||||||||
Sbjct  61   GTAGTCCTCGTTTCATTTATGGCTCCAATCAATTCAGTGAATCAAGCTTGTAACAAAATT  120

Query  122  GAGATCACAGGATGTATACCAGCGATACTTTACGGAGATAAACCAACAGCACAATGTTGT  181
            |||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  121  GAGATCACGGGATGTGTACCAGCGATACTTTACGGAGATAAACCAACAACACAATGTTGT  180

Query  182  GGGAAAATGAAAGCACAACAACCATGTTTTTGTGATTTCATTAAGAATCCTGTTTTTAAT  241
            | |||||||||||||||| |||||||||||| | ||||||||||||| || |||||||||
Sbjct  181  GAGAAAATGAAAGCACAAGAACCATGTTTTTTTTATTTCATTAAGAACCCAGTTTTTAAT  240

Query  242  AAATACGTCACTTCCCCGCAAGCTCGTGCGATCTTAAAATTTTGTGGTATTCCTTATCCT  301
            ||||| ||||| |||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct  241  AAATATGTCACATCCCCGCAAGCTCGCGCAATCTTAAAATGTTGTGGTATTCCTTATCCT  300

Query  302  ACTTGTTGATGTC  314
            |||||||||||||
Sbjct  301  ACTTGTTGATGTC  313


 Score =  104 bits (56),  Expect = 5e-22
 Identities = 62/65 (95%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  185  AAAATGAAAGCACAACAACCATGTTTTTGTGATTTCATTAAGAATCCTGTTTTTAATAAA  244
            ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct  472  AAAATGAAAGCACAAGAACCATGTTTTTGTGATTTCATTAAGAACCCAGTTTTTAATAAA  531

Query  245  TACGT  249
            |||||
Sbjct  532  TACGT  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5