BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936716

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29130.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   584    2e-166


> AT3G29130.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain 
of unknown function KxDL (InterPro:IPR019371). | chr3:11102272-11103906 
REVERSE LENGTH=840
Length=840

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 362/384 (94%), Gaps = 4/384 (1%)
 Strand=Plus/Plus

Query  1    AGGTTCATAAGAAGTGTCTGATGGAAGAAACCATAAGAGCAGCTTCACAAGAAGTTTCTG  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| 
Sbjct  187  AGGTTCATAAGAAGTGTCAGATGGAAGAAACCATAAGAGCAGCTTCACAAGAAGTGTCTA  246

Query  61   ATGAATTCAAAACTCTTGTTAAAGCAGAAGATCTGAATTCTCTTAGACATTTGCAGCATC  120
            | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct  247  ACGAATTCAAAACTCTTGTTAAAGTAGAAGATTTGAATTCTCTTAGACATTTGCAGCATC  306

Query  121  TCATATTGGGGAGGTTACAGGATAGCAATGCAGTTCTCTCCCATTACAATGAATTTGCAG  180
            |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  307  TCATATTGGGGAGGCTACAGGATAGCAATGCAGTTCTCTCCCATTACAACGAATTTGCAG  366

Query  181  AGAATTGC-TTCGCTGATGTATCATTGGAATTCGCTAGAAACACCCGTCTTTTGAAATCG  239
            |||||||| || | ||||||||||||||||||||||||||  |||||||||||||| |||
Sbjct  367  AGAATTGCTTTAG-TGATGTATCATTGGAATTCGCTAGAAGTACCCGTCTTTTGAAGTCG  425

Query  240  ATGAAAGCTGACCTTGATTACATCTTCTTGAAACTAAGGAGCATTAAAAGTAAGATTTC-  298
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  426  ATGAAAGCAGACCTCGATTACATCTTCTTGAAACTAAGGAGCATTAAAAGTAAGA-TTCT  484

Query  299  GGCTACATATCCAGACGCATTTCCAGATGATTCTACTAGTGATGCTTTTGATCGAAGACC  358
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  485  GGCTACGTATCCAGACGCATTTCCAGATGATTCTACTAGTGATGCTTTTGATCGACGGCC  544

Query  359  CGATCTCGAGTTGCCTCATTAAGC  382
            |||||||||||||||||| |||||
Sbjct  545  CGATCTCGAGTTGCCTCAATAAGC  568



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5