BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936721

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29170.1 | Symbols:  | Eukaryotic protein of unknown functio...   593    3e-169


> AT3G29170.1 | Symbols:  | Eukaryotic protein of unknown function 
(DUF872) | chr3:11136006-11137849 REVERSE LENGTH=703
Length=703

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 367/389 (94%), Gaps = 4/389 (1%)
 Strand=Plus/Plus

Query  20   AATGGCGTCAAGGAGAAGTGTACGGTATGCACAGCTTCCAGGAGATGAAGATGATGAAGA  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  103  AATGGCGTCAAGGAGAAGTGTACGGTATGCACAGCTTCCAGGAGATGAAGATGATGAAGG  162

Query  80   TTATGGAAATGGTGTTGGTCGAA-GGAGAGATTTCGATCCTCGTTTCGATTATACACCGA  138
             |||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||
Sbjct  163  CTATGGAAATGGTGTTGGT-GAAAGGAGAGATTTCGATCCTCGGTTCGATTATTCACCGA  221

Query  139  AATCATTTGATAGAGTACCATGGAAATCAATAGCATTAGCTGTGTTTCTTCTGTTCCTTG  198
            || ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct  222  AAGCATTTGATAGAGTTCCATGGAAATCTATAGCATTAGCTGTGTTTCTTTTGTTTCTTG  281

Query  199  GTTGTTTGCTTCTTCTTTTGTCGTTTTTTATCTTTATTGGTCACATGGAAGGAGATAGCT  258
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  282  GTTGCTTGCTTCTTCTTTTGTCGTTTTTTATCTTCATTGGTCACATGGAAGGAGATAGCT  341

Query  259  CTCAAGGTTATGCTCTT-CTTGTTCTTGGGATCCTTACTTTTCTCCCTGGTTTCTACGAG  317
            |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  342  CTCAAGGTTATGCG-TTACTTGTTCTTGGGATCCTTACTTTTCTCCCTGGTTTCTACGAG  400

Query  318  ACCCGGATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTCGCTGCAATTCCC  377
            ||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct  401  ACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTTGCAGCCATTCCC  460

Query  378  TCCTACTGAACTCAAGTAACTCGAGAAGT  406
            || |||||||||||||||||| |||||||
Sbjct  461  TCTTACTGAACTCAAGTAACTGGAGAAGT  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5