BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936727
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48000.1 | Symbols: CYP708A2, CYP708 A2, THAH, THAH1 | cytoc... 364 1e-99
AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein |... 294 1e-78
> AT5G48000.1 | Symbols: CYP708A2, CYP708 A2, THAH, THAH1 | cytochrome
P450, family 708, subfamily A, polypeptide 2 | chr5:19444138-19447850
REVERSE LENGTH=1792
Length=1792
Score = 364 bits (197), Expect = 1e-99
Identities = 424/530 (80%), Gaps = 30/530 (6%)
Strand=Plus/Plus
Query 891 TTGGCCGT-AAACTTCATT-ACGAAAAACCCTAAAGTTTTATCAGAGTTGAAGAGAGAAC 948
|||||| | ||| ||| || || |||||| ||||| | | ||||||||||||| || |
Sbjct 1069 TTGGCCATCAAATTTC-TTGCCG-AAAACCATAAAGCTCTCGCAGAGTTGAAGAGGGAGC 1126
Query 949 ATAAGGCGATTCTTCAAAACAGAGATGATGAAA--ATTCTGGAATTACCTGGGAAGAATA 1006
|| ||| || |||||||| ||| ||| | ||| | ||||| ||| ||||||||||||
Sbjct 1127 ATGCGGCCATCCTTCAAAATAGAAATGGT-AAAGGA-GCTGGAGTTAGCTGGGAAGAATA 1184
Query 1007 CAGACA-CAACATGACTTTTACCAACATGGTGATTAAGGAGACTCTTCGAATGGCAAATG 1065
|||||| ||| |||||||| || ||||||||||| || ||||||||||||||||||||
Sbjct 1185 CAGACACCAA-ATGACTTTCACTAACATGGTGATAAATGAGACTCTTCGAATGGCAAACA 1243
Query 1066 TGGCTCCTGTAATGTTTAGAAAGGCTTTGAACGATGTCGAAATCAAAGGATATACAATTC 1125
|||||||| |||||| |||||||||| |||||||||||||||||||||| || |||||||
Sbjct 1244 TGGCTCCTATAATGTATAGAAAGGCTGTGAACGATGTCGAAATCAAAGGTTACACAATTC 1303
Query 1126 CAGCGGGTTGGATGGTGGTGGTTGCAAGTTCAG-TGATTCATTAT-GATCATACGATATA 1183
||||||| ||||| |||| |||| | ||| || | |||| | || || | || ||
Sbjct 1304 CAGCGGGCTGGATTGTGGCGGTTATACCACCAGCTG-TCCATT-TCAATGATGCTATTTA 1361
Query 1184 TGAAAACCCTTTTGAGTTTAACCCATGGAGATGGGAGGGCAAAGAGCTGC-TTAATGGTT 1242
||| || ||||| ||||| || ||||||||||||||||| |||||| ||| | ||| |
Sbjct 1362 TGAGAATCCTTTGGAGTTCAATCCATGGAGATGGGAGGGGAAAGAGTTGCGGT-CTGGAT 1420
Query 1243 CTAAGACGTTCATGGTGTTTGGAGGTGGAGTGAGATC-GTGTATTGGTGCAGAGTTTGCA 1301
||||||||||||||||||||||||||||||||||| | |||| | || || ||||||||
Sbjct 1421 CTAAGACGTTCATGGTGTTTGGAGGTGGAGTGAGA-CAGTGTGTCGGCGCGGAGTTTGCG 1479
Query 1302 AGGCTTCAGATTTCAATATTTATACA-CAATCTTGTCACCAAC-TACGATTTCTCGAT-G 1358
|| || || ||||| || || || || || |||||| || ||| ||||||||||| || |
Sbjct 1480 AGACTACAAATTTCTATCTTCATTCATCA-TCTTGTAAC-AACCTACGATTTCTC-ATTG 1536
Query 1359 GTCCAAGACTGCGAAGT-CACTC-GTACTCCACTGCCTT-CTTTCCCCAA 1405
| |||||| | || ||| || || || | ||||| || | ||| ||||||
Sbjct 1537 GCCCAAGAAT-CGGAGTTCA-TCCGTGCACCACTCCCATACTT-CCCCAA 1583
> AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein
| chr3:16432443-16434848 FORWARD LENGTH=1440
Length=1440
Score = 294 bits (159), Expect = 1e-78
Identities = 449/587 (76%), Gaps = 28/587 (5%)
Strand=Plus/Plus
Query 84 TGGTGGTACCGATGGTCAAACCCCCAGTGTAATGGCAAGTTACCTCCGGGATCAATGGGT 143
|||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||
Sbjct 64 TGGTGGTACCAATGGTCAAACCCTAAGTCTAACGGCAAGTTACCTCCGGGATCAATGGGT 123
Query 144 TTTCCGATCATTGGAGAGACAATCGACTTCTTTAAACCTCATGGACTCCT-CGAGATCTT 202
|| |||||||| ||||||||| | || |||||||| ||| ||||| || | ||||||||
Sbjct 124 TTCCCGATCATCGGAGAGACATTAGATTTCTTTAAGCCTTATGGATTC-TACGAGATCTC 182
Query 203 ACCCTT-TGTCaa-aaaaaGGATGTTAAGGTATGGGCCACTGTTTCGCACCAACATT-TT 259
||| | | |||| |||||| |||||||||||||||||| | ||||| || |||||| ||
Sbjct 183 -CCCATATCTCAAGAAAAAG-ATGTTAAGGTATGGGCCATTATTTCGGACAAACATTCTT 240
Query 260 CGGAACCAATACTGTGGTAGCGACGGACCCTGATGTGATCTACG-AGATTTTTCGGCAAG 318
||| || || |||||| ||||||| ||||| | | | | ||||||| | ||||
Sbjct 241 -GGAGTAAAAACCGTGGTATCGACGGATAAGGATGTTAAC-ATGGAGATTTTAAGACAAG 298
Query 319 AGAACAAGTCTTTCGTGTTTA-GCCT-TCCGGATAATTTTCTCAAGATCTTTGG-AAAAG 375
|||||||||||||| | |||| | | ||||||| ||| | ||| | |||| |||||
Sbjct 299 AGAACAAGTCTTTCAT-TTTAAGT-TATCCGGATGGTTTAATGAAGC-CATTGGGAAAAG 355
Query 376 ATAATCT-GTTAAGTGAACATGGGGA-CGCCCACAAGCATGCCAAACAAATCACTCTAAA 433
||| || ||| |||| || || | | ||||||||| ||||||||| ||||| |
Sbjct 356 ATAG-CTTGTTCT-TGAAGATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCA 413
Query 434 TTTTCTTGGC-TCTGAGGGATTGAAGCACAACATGAT-AGGAGACATGGACAAAGTGACC 491
| || ||| | || ||||| || || | || || || | ||| |||||| |||||
Sbjct 414 TCTT-TTGTCCTCCGAGGGTTTAAAACGGAAAAT-ATTAAAAGATATGGACCGTGTGACA 471
Query 492 CGCGAGGAACTTAGATC-AAAGGCTAGCCTCGGGA-GCTTCGATGTTAAGGAGGCCGTTA 549
|||||| | ||||| || |||| ||| | ||| | || ||||||||||| || |||
Sbjct 472 CGCGAGCATCTTAGTTCGAAAG-CTAAAA-CAGGAAGATTGGATGTTAAGGACGCAGTTT 529
Query 550 CAAGCTTGATAATAACTCACTTGACCCCCAAGTTGATAAGTAACCTTGGATCAGAGACTC 609
||| ||||||||| | |||||||| || ||| |||| ||||| || | || ||||||
Sbjct 530 CAAAATTGATAATAGCCCACTTGACACCTAAGATGATGAGTAATCTCAAACCACAGACTC 589
Query 610 AAGCAAATCTTATAGAAAGTTTCAAGGCATGCAATCTTGATTGGTTT 656
||||||| ||||| | || ||| ||||| | || | |||||||||||
Sbjct 590 AAGCAAAGCTTATGGGAATTTTTAAGGCCTTCACTTTTGATTGGTTT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5