BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936735
Length=283
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13680.1 | Symbols: CALS5, GLS2, ATGSL02 | callose synthase ... 363 7e-100
> AT2G13680.1 | Symbols: CALS5, GLS2, ATGSL02 | callose synthase
5 | chr2:5694398-5706134 FORWARD LENGTH=5925
Length=5925
Score = 363 bits (196), Expect = 7e-100
Identities = 229/245 (93%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 11 GAACTACAGGATGTATTCGAGAAGCCACTTTGTGAAAGGAATGGAGCTGATGGTGCTGCT 70
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5016 GAACTACAGAATGTATTCGAGAAGCCACTTTGTGAAAGGAATGGAGCTGATGGTGCTGCT 5075
Query 71 GATATGTTACAGGCTGTACGGGAAAGCAACAGAGGACTCAGTGGCATATGCGCTTGTGAT 130
||||||||||||| | || ||||||||| |||||||||| |||| ||||||||||| ||
Sbjct 5076 GATATGTTACAGGATTTATGGGAAAGCAGCAGAGGACTCGGTGGGTTATGCGCTTGTCAT 5135
Query 131 GGGCTCAACCTGGTTCCTGGTGGGTTCCTGGTTGTTTGATC-AGTTCTTTTTCAATCCCT 189
||||||||| |||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct 5136 GGGCTCAACATGGTTCCTGGTGGGTTCCTGGTTGTTCGCCCCA-TTCTTTTTCAATCCCT 5194
Query 190 CAGGATTCGAGTGGCAGAAGATAGTTGATGACTGGGATGATTGGAACAAGTGGATAAGCA 249
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5195 CGGGATTCGAGTGGCAGAAGATAGTTGATGACTGGGATGATTGGAACAAGTGGATAAGCA 5254
Query 250 GCAGA 254
|||||
Sbjct 5255 GCAGA 5259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13019346991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5