BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936741
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 667 0.0
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 584 3e-166
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 545 1e-154
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 532 1e-150
AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9... 311 6e-84
AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 124 8e-28
AT5G38810.1 | Symbols: | F-box and associated interaction doma... 78.7 6e-14
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 65.8 5e-10
AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-... 58.4 8e-08
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 667 bits (361), Expect = 0.0
Identities = 459/505 (91%), Gaps = 11/505 (2%)
Strand=Plus/Plus
Query 96 CTACAAGGACAAATTAGCTGTGATTTATTGGGTGGATGATGTCGACATTTATGAGATTAA 155
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 735 CTACAAGGGCAAATTAGCTATGATTTATTGGGAGGATGATGTCGACATTTATGAGATTAA 794
Query 156 TTATTA-CGC-AGGTCGCGATCTCGATAAATATTTGGAGGAAAATCTCGACGTTGAAGCC 213
| | || || || | |||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 795 TCA-TATGGCTGGGAAG-AATCTTGATAAGTATTTGGAGGAAAATCTCGATGTTGATGCC 852
Query 214 ACTAATGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATAT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ACTAATGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATAT 912
Query 274 GCCTACACTTGGACCGATGATACATTCTTCCGTCGTCATGTTTCCATCGCTGGAGCGACT 333
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct 913 GCCTACACTTGGACCGATGATACATTCTTCCGTCGTCACCTTTCCATTGCTGGAGCCACT 972
Query 334 CCTTT-GGGTGAAATAGTATTTTCGATGCGCAAGTATACATCTAAACAACCGTTTTATGT 392
||| |||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 973 G-TTTCGGGTGAAATAGTGTTTTCGATACGCAAGTACACATCTAAACAACCGTTTTATGT 1031
Query 393 TTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGA 452
||||||||||||||||||| ||| |||||||||||||| |||| |||||||||||||||
Sbjct 1032 TTTCTACTTCAATCCCGAATCGAACACTCTCCAACGTGTAGAAACCCAAGGTTTTGGTGA 1091
Query 453 AGCGTTTAAGG-AGA--CTTGTAGCGTTCGCACCTTTGTAAACCACGTAGAGGATCTTGA 509
||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1092 AGCATTTAAGGCAGAAACTTGTAGCGTTCGCACCTTTGTAAACCACGTAGAGAATCTTGA 1151
Query 510 TGTTAACGATTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTGGAGCCAGAATATTA 569
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 1152 TGTTAACGATTTAAAACAACTCAAGTCAGGCCATCCTCCATTGGTGCAGCCAGAAAATTA 1211
Query 570 T-GAACCATCAGATTCAGAATCAGA 593
| | | |||||| ||||| |||||
Sbjct 1212 TTGT-CTATCAGACTCAGATTCAGA 1235
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 584 bits (316), Expect = 3e-166
Identities = 400/440 (91%), Gaps = 7/440 (2%)
Strand=Plus/Plus
Query 96 CTACAAGGACAAATTAGCTGTGATTTATTGGGTGGATGATGTCGACATTTATGAGATTAA 155
|||||||| ||| |||| |||||| ||||||| |||||||||||||||| ||||||||
Sbjct 1140 CTACAAGGGCAAGTTAGATGTGATCTATTGGGAGGATGATGTCGACATTCATGAGATTTG 1199
Query 156 TTA-TTACGCAGGTCGCGATCTCGATAAATATTTGGAGGAAAATCTCGACGTTGAAGCCA 214
||| || || | | ||||||||| | |||||||| |||||||| |||| ||| ||||
Sbjct 1200 TTACTT-TGC--GAAG-GATCTCGATGAGTATTTGGACGAAAATCTTGACGCTGATGCCA 1255
Query 215 CTAATGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATATG 274
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1256 CTAACGAGTTGCATGTGTGGGTTCTAGAAGATGTTGAGAAACAGGAATGGTCTAAATATG 1315
Query 275 CCTACACTTGGACCGATGATACATTCTTCCGTCGTCATGTTTCCATCGCTGGAGCGACTC 334
|||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||
Sbjct 1316 CCTACACTTGGACCGATGATACATTCTTCCATCGTCACCTTTCCATTGCTGGAGCCACTG 1375
Query 335 CTTTGGGTGAAATAGTATTTTCGATGCGCAAGTATACATCTAAACAACCGTTTTATGTTT 394
||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1376 CTTCGGGTGAAATAGTGTTTTCGATGCGCAAGTACACATCTAAACAACCATTTTATGTTT 1435
Query 395 TCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAG 1495
Query 455 CGTTTAAGGAGA-CTTGTAGCGTTCGCACCTTTGTAAACCACGTAGAGGATCTTGATGTT 513
|||||| ||| | ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1496 CGTTTA-GGACAACTTGTAGTGTTCGCACCTTTGTAAACCACATAGAGGATCTTGATGTT 1554
Query 514 AACGATTTAAAACAACTCAA 533
||||||||| ||||||||||
Sbjct 1555 AACGATTTAGAACAACTCAA 1574
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 545 bits (295), Expect = 1e-154
Identities = 410/464 (88%), Gaps = 13/464 (3%)
Strand=Plus/Plus
Query 96 CTACAA-GGACAAATTAGCTGTGATTTATTGGGTGGATGATGTCGACATTTATGAGATTA 154
||| || ||| |||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 937 CTATAAGGGA-AAATTAGCTGTGATTTATTGGGAGGATGATGTCGACATTTATAAGCTTT 995
Query 155 ATTATTACGCAGGTCGCGATCTCGATAAATATTTGGAGGAAAATCTCGACGTTGAAGCCA 214
|||||| || | || ||| || ||||| ||||| | ||| | ||| ||| | ||
Sbjct 996 ATTATT-CGGATGT--CGA---CG---AATATGTGGAGTATAATATTAACGATGATGACA 1046
Query 215 CTAATGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATATG 274
||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct 1047 TTAATGAGTTGCGTGTGTGGGTTCTAGAGGATGTTAAGAAACAGCAATGGTCGAAATATG 1106
Query 275 CCTACACTTGGACCGATGATACATTCTTCCGTCGTCATGTTTCCATCGCTGGAGCGACTC 334
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 1107 CCTACACTTGGACCGATGATAGATTCTTCCGTCGTCGTGTTTCCATCGCTGGAGGGACTG 1166
Query 335 CTTTGGGTGAAATAGTATTTTCGATGCGCAAGTATACATCTAAACAACCGTTTTATGTTT 394
||| |||||||||||| |||||||||| ||| |||||| |||| ||||||||||||||||
Sbjct 1167 CTTCGGGTGAAATAGTGTTTTCGATGCTCAAATATACACCTAAGCAACCGTTTTATGTTT 1226
Query 395 TCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAG 454
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1227 TCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAG 1286
Query 455 CGTTTAAGGAGACTTGTAGCGTTCGCACCTTTGTAAACCACGTAGAGGATCTTGATGTTA 514
||| ||| | |||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 1287 TGTTAAAGAAAACTTGTAGAGTTTGCACCTTTGTAAACCACGTAGAGGATCTTAATGTTC 1346
Query 515 ACGA-TTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTGGA 557
|||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1347 ACGACTTTAAA-CAACTCAAGTCAGTCCATCCCCCATTGGTGGA 1389
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 532 bits (288), Expect = 1e-150
Identities = 423/486 (87%), Gaps = 18/486 (4%)
Strand=Plus/Plus
Query 96 CTACAAGGACAAATTAGCTGTGATTTATTGGGTGGATGATGTCGACATTTATGAGATTAA 155
|||||||| ||||||||||||||||||||||| |||||||||||||||| | ||| || |
Sbjct 798 CTACAAGGGCAAATTAGCTGTGATTTATTGGGAGGATGATGTCGACATTCAAGAGCTTTA 857
Query 156 TTATTACGCA-GGTCGCGATCTCGATAAATATTTGGAGGAA-AATCTCGACGTTGAAGCC 213
||| | | ||| ||| |||| ||||| |||| ||| ||| || ||| ||| |||
Sbjct 858 TTA-CAAAAAGGGTATAGATGTCGAGGAATATGTGGA-GAATAATGTCAACGCTGATGCC 915
Query 214 ACTAATGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATAT 273
|||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||
Sbjct 916 ACTAATGAGTTGTGTGTGTGGATTCTAGCGGATGTTGAGAAACAGGAATGGTCGAAACAT 975
Query 274 GCCTACACTTGGACCGATGATACA-TTCTTCCGTCGTCAT-GTTTCCATCGCTGGAGCGA 331
|||||||||||||||||||| | | |||||||||||| | || ||||||||||||| ||
Sbjct 976 GCCTACACTTGGACCGATGA-AAAGTTCTTCCGTCGT-TTGGTATCCATCGCTGGAGTGA 1033
Query 332 CTCCTTTGGGTGAAATAGTATTTTCGATGCGCAAGTATACAT-CTAAACAACCGTTTTAT 390
|| ||| |||||||||||| |||||||||||||||| || || |||||||||||||||||
Sbjct 1034 CTGCTTCGGGTGAAATAGTGTTTTCGATGCGCAAGTGTA-ATCCTAAACAACCGTTTTAT 1092
Query 391 GT-TTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGTTTTGG 449
|| ||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 1093 GTGTTT-TACTTCAATCCCGAAAGGAACAGTCTCCAACGTGTTGAAATTCAAGGTTTTGG 1151
Query 450 TGAAG-CGTTTAAGGAGA-CTTGTAG-CGTTCGCACCTTTGTAAACCACGTAGAGGATCT 506
||||| || || | || | ||||| | |||| ||||||||||||||||||||||||||||
Sbjct 1152 TGAAGCCG-TT-ACGAAATCTTGT-GACGTTTGCACCTTTGTAAACCACGTAGAGGATCT 1208
Query 507 TGATGTTAACGATTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTGGAGCCAGAATA 566
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1209 CAATGTTTACGATTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTCGAGCCAGAATA 1268
Query 567 TTATGA 572
||||||
Sbjct 1269 TTATGA 1274
> AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9863744
FORWARD LENGTH=1275
Length=1275
Score = 311 bits (168), Expect = 6e-84
Identities = 308/372 (83%), Gaps = 23/372 (6%)
Strand=Plus/Plus
Query 207 TGAAGCCACTAATGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC 266
||| |||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 864 TGATGCCATTAATAAGTTGAATGTGTGGGTTCTAGAGGATGTAGAGAAACAGGAATGGTA 923
Query 267 TAAATATGCCTACACTTGGACCGATGATACATTC-TTC--CGTCGTCATGTTTCCATCGC 323
|||||||||||||||||||||||||||| |||| ||| |||||| | |||||| | ||
Sbjct 924 GAAATATGCCTACACTTGGACCGATGATATATTCTTTCGTCGTCGTGAGGTTTCCGTTGC 983
Query 324 TGGAGCGACT-C--CTTTGGGTGAAATAGTATTTTCGATGCGCAAGTATACAT-CTAAAC 379
| | ||||| | ||| |||||| ||||| ||||||||| | ||||||| | || ||
Sbjct 984 TCCAACGACTGCTGCTTGGGGTGACATAGTCTTTTCGATGTGTGAGTATAC-TCCTGGAC 1042
Query 380 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCC 439
|||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1043 AACCATTTTATGTTTTCTACTTCAATCCCGAAAAGAGCACTCTCCAACGTGTTGAAATCC 1102
Query 440 AAGGTTTTGGTGAAG-CGTTTAAGGAGACTTGTAGCGTTCGCACCTTTGTAAACCACGTA 498
||||||||||||||| ||||| | || | || || |||||||||| || |||||
Sbjct 1103 AAGGTTTTGGTGAAGGCGTTT--GTAG-C--GT----TTA-CACCTTTGTAGACGACGTA 1152
Query 499 GAGGATCTTGATGTTAACGATTTAAAACA-ACTCAAGTCAGTCCA-TCCTCCATTGGTGG 556
|| |||||| ||||||| ||||||||| | ||||||| || |||| | ||||||| | |
Sbjct 1153 GAAGATCTTAATGTTAAGGATTTAAAA-ATACTCAAGCCA-TCCAATGCTCCATTTGAGA 1210
Query 557 AGCCAGAATATT 568
|| ||||| |||
Sbjct 1211 AGACAGAAGATT 1222
> AT3G56890.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660
Score = 124 bits (67), Expect = 8e-28
Identities = 189/243 (78%), Gaps = 27/243 (11%)
Strand=Plus/Plus
Query 219 TGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGG-TCTAAATATGCCT 277
||||||| | ||||||||||||||||||||||||||||||||||| || || |||| ||
Sbjct 261 TGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCT 319
Query 278 ACACTTGGACCG-ATGA-T-ACATTC-TTCCGT-CGT-C-ATGTTTCCA-TCGCTGGAGC 329
|||||| |||| | || | | | || || || | | | | |||| || | |||||||
Sbjct 320 ACACTTT-ACCGGA-GAATGA-AGTCCTTG-GTTCCTGCGA-GTTTTCAGTTGCTGGAGT 374
Query 330 GACTCCTTTG-GGTGAAATAGTATTT-TCG-ATGCGCAAGTATACATCTAAACAACCGTT 386
|||| | | || || || || ||| | | ||| |||||||||| ||||| | ||
Sbjct 375 GACTGCAA-GAGGCGATATTGT-TTTGT-GTATG---AAGTATACATGTAAAC--C-GTA 425
Query 387 TTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGGTTT 446
||||| ||||||||| ||||||||| ||| || |||||| |||||||||||||||||||
Sbjct 426 CTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTT 485
Query 447 TGG 449
|||
Sbjct 486 TGG 488
> AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:15540484-15541540 REVERSE LENGTH=780
Length=780
Score = 78.7 bits (42), Expect = 6e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 219 TGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC 266
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 582 TGAGTTGTGTGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC 629
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 65.8 bits (35), Expect = 5e-10
Identities = 67/81 (83%), Gaps = 8/81 (10%)
Strand=Plus/Plus
Query 340 GGTGAAATAGTATTTTC-GATGCGCAAGTATACATCTA-A-AC-AACCGTTTTATGTTTT 395
|||||||| || ||||| || | | | |||| ||||| | | ||||||||||||||||
Sbjct 352 GGTGAAATTGTTTTTTCGGA-G-TC-A-TATATATCTACATCCAAACCGTTTTATGTTTT 407
Query 396 CTACTTCAATCCCGAAAGGAA 416
||||||||||||||||| |||
Sbjct 408 CTACTTCAATCCCGAAAAGAA 428
> AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-17340972
REVERSE LENGTH=921
Length=921
Score = 58.4 bits (31), Expect = 8e-08
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 414 GAATACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAA 453
||| ||| |||||||||||||||||||||||||||| |||
Sbjct 585 GAACACTATCCAACGTGTTGAAATCCAAGGTTTTGGAGAA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5