BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936746
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29310.1 | Symbols: | calmodulin-binding protein-related | ... 1243 0.0
> AT3G29310.1 | Symbols: | calmodulin-binding protein-related
| chr3:11249652-11251820 FORWARD LENGTH=2084
Length=2084
Score = 1243 bits (673), Expect = 0.0
Identities = 865/952 (91%), Gaps = 35/952 (4%)
Strand=Plus/Plus
Query 852 TTTTGTTACTTCTAGTGAGGATGAAGATAACAATGCAGACATGACTGATGATAGTGAAGA 911
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 813 TTTTGGTACTTCTAGTGAGGATGAAGATAACAATGCAGACATGAGTGATGATAGTGAAGA 872
Query 912 AGTCCCAGTGAGTTCTAGTGATAAGAAAAAGGTTGCTAGCTCTAAGTCTAGAACCGGGCA 971
||| ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 873 AGTTCCAGTGAGTTCTATTGATAAGAGAAAGGTTGCTAGTTCTAAGTCTAGAACCGGGGT 932
Query 972 TGTAATAAAAGGCAATGTAGTGAAGACTCCGGTTAGGAAATTTGTTGTATTGGACAAGAA 1031
||| ||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 933 TGTGATAGAAGGTGATGTAGTGAAGCCTCCGGTTATGAAATTTGTTGTATTGGACAAGAA 992
Query 1032 CAGGAATTTGTGTCAGGTATATGGAAATAGGCATGATCTAACTTCGAGTGCCGAGGATGA 1091
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 993 CAGGAATGTGTGTCAGGTATATGGAAATAGGCATGATCTAACTTCGAGTGCAGAGGATGA 1052
Query 1092 TTCAGTTGATGGTGACGAGGAAATCCTCGTGATGTCCAGGGGTAATGGAAGGAGGCAGAG 1151
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||
Sbjct 1053 TTCAGTTGATGGTGACGAGGAAACCCTTGTGATGTCCAGGGATAATGGAAGGAAGCAGAG 1112
Query 1152 TTTAAAAACTAGGAACGGGGTTTTGGTGAAAGGAAATGGAGGGAAGACAACTCGGGTGGT 1211
||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1113 TTTGAAAGCTAGGAACGGGGTTTCGGTGAAAGGAGGTGGAGGGAAGACAACTCGGGTGGT 1172
Query 1212 GAAAACTGTGAGCTTTGATGAGAATGGGAATGTATGTAAGGTTTTTGGAGATTCAGATGA 1271
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 1173 GAAAACTGTGAGTTTTGATGAGAATGGGAATGTATGTAAGGTTTATGGAGATACACATGA 1232
Query 1272 CCTAACTTCTAGTGCAGA-G--GATGATTCAGTTGATGACGGAGAGGAAACCCTCGTGAT 1328
|||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||
Sbjct 1233 CCTAACTTCTAGTGCAGAGGATGATGATTCAGTTGACGTTGGAGAGGAAACCCTCGTGAT 1292
Query 1329 GTCCAGGGATGATGGAAAGAGGCATAGTTCGAAAACTGGGAACAGGGTTTTGGTGAAAGG 1388
|| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1293 GTGTAGGGATGAGGGAAAGAGGCGTAGTTCGAAAACTGGGAGCAGGGTTTTGGTGAAAGG 1352
Query 1389 AAGTGGAGGAAAAACAAACCGTGTGGTGAAAACTGTGAGCTTTGATGAGAATGGGAATGT 1448
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1353 AAGTGGAGGAAAAACAAACCGTGTGGTGAAAACTGTGAGCTTTGACGAGAATGGGAACGT 1412
Query 1449 ATATAAGGTTTATGGAGATACGCCAGAGTCAAGCAT-A-A-GTGAGGAAGATGACTCAAC 1505
||||||| |||||||||||||||||||||||| || | | |||||||||||||||| ||
Sbjct 1413 CTATAAGGCTTATGGAGATACGCCAGAGTCAAGTATTATAAGTGAGGAAGATGACTCGAC 1472
Query 1506 AAGCGGATCAAACGATGGAAATGGAGATGAGAAAGGGAATGCGAATGAGGTTGAGGAAAT 1565
|||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1473 AAGCGGATCAAATGAAGGAAATGGAGAAGAGAAAGGGAATGTGAATGAGGTTGAGGAAAT 1532
Query 1566 CAAATACGTTCCCAAGGAAAACGAGAGCTTTgaagatgaagaaaaagaagaagaagaaaC 1625
|||||||||||||||||||||||||||||||||||| |||||| ||| || | |||||
Sbjct 1533 CAAATACGTTCCCAAGGAAAACGAGAGCTTTGAAGAAGAAGAA---GAA-AA-A-GAAAC 1586
Query 1626 TGATTCTGAAAATGAAGTTTCTTCTTCAGAGGGCAGTGAAAGGAAGACAGGAGCGAACCA 1685
|||||||||||||||||||||||||||||||||||||||| || | | | | || |
Sbjct 1587 TGATTCTGAAAATGAAGTTTCTTCTTCAGAGGGCAGTGAA-GG--G---G-A-C-AA--A 1635
Query 1686 TCAAGGAAGTAAC-AAACACGAGAGGGAAATCCAGCTTGAAAAAGGAAGCTTAATGTTCT 1744
| | | || || ||| | | |||| |||||| | |||||||||||||||||||||
Sbjct 1636 --A-G-A-GTTACTAAAAA-G-GAGG----TCCAGCATCAAAAAGGAAGCTTAATGTTCT 1684
Query 1745 CTCCTCCATTGCCACTAAAAATGGAGCCTTGACCAGTGAGTCATGAAAGAAT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CTCCTCCATTGCCACTAAAAATGGAGCCTTGACCAGTGAGTCATGAAAGAAT 1736
Score = 1005 bits (544), Expect = 0.0
Identities = 721/802 (90%), Gaps = 29/802 (4%)
Strand=Plus/Plus
Query 4 GACTCCGCCGTCGATTCCATGGCTTCTcaccaccaccaccaccacaacaacaacgggtgc 63
|||||||||||||||| |||||||||||||||||||||| |||| ||| | ||| ||||
Sbjct 43 GACTCCGCCGTCGATTACATGGCTTCTCACCACCACCACAACCATAAC--C-ACGTGTGC 99
Query 64 tcacgccaccaaaaccaccacaaTAGTATCCCTCTAGTCGCCACGTCAACACACTGCTGC 123
||||||||||||||||||||||||| | ||||| | ||||||||||| || ||||||||
Sbjct 100 TCACGCCACCAAAACCACCACAATAACACCCCTCAATTCGCCACGTCACCAAACTGCTGC 159
Query 124 ACCCAAAT-CAACCACCCTTCTccgccgccgccgccgccgGAGGATAATCTTGTCCATCT 182
| ||||| ||||||||||||| |||||| | | | |||||||||||||| ||||||
Sbjct 160 A-ACAAATCCAACCACCCTTCT---CCGCCG-C-CAG-CGGAGGATAATCTTCTCCATC- 211
Query 183 TC-TCGCAACTTACCTTCAAAATCATCAACAAGAAACTCAATGTTCCTGCGAAACTTCGT 241
|| |||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 212 TCGTCGCTACTTACCTCCAAAATCATCAACAAGAAACTCAATGCTCCTGCGAGACTTCTT 271
Query 242 GTCAAAACTTCAATGTTATTAGAGGTCA-ACACCGTGTTTTGGGTCAGCAAAAGAATGTT 300
||||||||||||||||||||||| |||| | ||||||||||| ||||||| |||||||||
Sbjct 272 GTCAAAACTTCAATGTTATTAGAAGTCAGA-ACCGTGTTTTGCGTCAGCATAAGAATGTT 330
Query 301 CCACGAGAATACGACCAAGTTGTTATGTCTTGTCTTCTCCGCAAAATCAATGATCTTGAA 360
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 331 CCACGAGAATACGACCAAGTTGTTCTGTCTTGTCTTCTCCGCAAAATCGATGATCTTGAA 390
Query 361 TCGTCCCTCAACAAGTTTTCAGCTTTCTATGAGC-AATGTCGAGATCGACACTCTACACT 419
|| || ||||||||||||||| |||||||||| | || |||||||||||||||| |||||
Sbjct 391 TCTTCACTCAACAAGTTTTCATCTTTCTATGA-CAAACGTCGAGATCGACACTCAACACT 449
Query 420 AAGAGATACGGCGGCGCGTGTTATTCAAACCCATTTCCGCTCTTACCTTGTTCACAGATC 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AAGAGATTCGGCGGCGCGTGTTATTCAAACCCATTTCCGCTCTTACCTTGTTCACAGATC 509
Query 480 CATATCCTTCAGACAACTCAAGGAGCTTGCAATGATAAAATCTAGCTTCTTGTCTCTCAA 539
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 510 CATATCCTTTAGACAACTCAAGGAGCTTGCAATGATAAAAGCTAGCTTCTTGTCTCTTAA 569
Query 540 ATCTTCAGTTTCAGGGAAACCCATTTTCCCTTTCAAGGTTGTATCTCGGAAAGCTACAGA 599
|||||| ||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 570 ATCTTCGGTTTCGGGGAAACTCATTTTCCCTTTCAAAGTTGTTTCTCGGAAAGCTACAGA 629
Query 600 CTTGCTTCTTCGACTGGATTCAATTCAGGGTAGGATTGATCCAATGATACGAAGTAGTAA 659
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 630 CTTGCTTCTTCAACTGGATTCAATTCAGGGTAGGATTGATCCAATGATAAGAAGTAGTAA 689
Query 660 GAGATCATTGAGCAGAGATTTGGTGAAGTTTTTGCAGTACATTGATGATTGTGCTGTTAA 719
|||||||||||||||||||||||||| |||| |||| || |||||||||||| ||||||
Sbjct 690 GAGATCATTGAGCAGAGATTTGGTGAGGTTTGTGCAATATGTTGATGATTGTGTTGTTAA 749
Query 720 AAGGTGTGAATTTGTTGCTAAGTCTGCAATAAGAGTGAGTAGACGCAGCAAACTTAATGG 779
||||| || ||||||| |||||||| | | ||| | ||| ||||||||||||
Sbjct 750 AAGGTATGGTTTTGTTGTTAAGTCTG------G--T-AGT-G--GCATCAAACTTAATGG 797
Query 780 GAAAAAGCCTCAGGGTTTTGGT 801
|||||||||||||||||||||
Sbjct 798 CAAAAAGCCTCAGGGTTTTGGT 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5