BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936753
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29340.1 | Symbols: | zinc finger (C2H2 type) family protei... 802 0.0
AT4G04404.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 350 3e-95
> AT3G29340.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr3:11259587-11262440 REVERSE LENGTH=1953
Length=1953
Score = 802 bits (434), Expect = 0.0
Identities = 586/658 (89%), Gaps = 16/658 (2%)
Strand=Plus/Plus
Query 501 TCGAAACAAGGGTTCAGCGAACTGCT-TCCTCGGAATAGTAAGTCGCTGAAAATACCT-- 557
|||||||||| |||||| ||| | | ||||||||| ||||||| || ||||| ||||
Sbjct 217 TCGAAACAAGAGTTCAGTGAAGT-ATATCCTCGGAAGAGTAAGTTGCAGAAAAGACCTGA 275
Query 558 GAG-AGTAGCTCCTGCTATGAATG-TAAGATATGTGGAAAGAGTTTTGGGTGTTATCAAG 615
||| |||||||||||||||||||| ||| ||||||| |||| |||||||||||||| ||
Sbjct 276 GAGTAGTAGCTCCTGCTATGAATGCAAAG-TATGTGGCAAGATTTTTGGGTGTTATCGAG 334
Query 616 GTCTAGGTGGCCACACAAAACTTCACAGATCGA-TGAA-AGGGCAATTGGCGCA-TACTG 672
|||||||||||||||| |||||||||||||||| | || |||| |||| ||| | ||||
Sbjct 335 GTCTAGGTGGCCACACGAAACTTCACAGATCGACT-AAGAGGG-AATTAGCG-AGTACTC 391
Query 673 AGGATAATAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAACCATCAT 732
| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 392 AAGATGAGAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCACAACCATCAA 451
Query 733 GCTTTGAAGTCTCTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAGACTTCA 792
||||| ||||||||| ||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 452 GCTTTAAAGTCTCTCAGGAGGAGAAGTTCTTACATTGTGTGGAGTTAAAACAAGACTTCA 511
Query 793 GTGAACTGCTTTCTCATTCGGGTGCATTACCTTCTACCCTGAGAAGTAAATTGCAGaaaa 852
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 512 GTGAACCGCTTTCTCATTCGGGTGCATTACCATCTACTCTGAGAAGTAAATTGCAGACAA 571
Query 853 aaaCTCAGAGCAAATCAAGCTGTGATTGCAAAATATGTGGGAAGAGTTTTGTGTGTTCTC 912
|||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 572 AAACTCAGTGGAAATCAAGCTGTCATTGCAAAATATGTGGCAAGAGTTTTGTGTGTTCTC 631
Query 913 AAGCTCTAGGTAATCACAAAAGAGTTCATAGACCGATAAATGGGAAATTAGCGCGTAAAA 972
||| | |||||||||||||||||||||| ||| ||| | |||||||||||| ||||||
Sbjct 632 AAGGTTTAGGTAATCACAAAAGAGTTCACAGAGAGATTAGCGGGAAATTAGCGTGTAAAA 691
Query 973 GGAAGTATACTGAAGATTATAATCCACTGTCTGACTCATTAGAAGCTAAGAAGATTGTTT 1032
||||||| |||||||| ||||||||| | |||||||||||| |||||||||||||||||
Sbjct 692 GGAAGTACACTGAAGACTATAATCCATTCTCTGACTCATTAAAAGCTAAGAAGATTGTTA 751
Query 1033 CGGAACCATCAAGCTTTGAGGTTTCTCAGGA-GA-AA-AGCTTACATTGTGTTGAGTTAA 1089
|||||||||||||||| || |||||||| || || | ||||||||||||||||||||
Sbjct 752 AAAAACCATCAAGCTTTGAAGTCTCTCAGGAGGAGAAGATCTTACATTGTGTTGAGTTAA 811
Query 1090 AACAAGACTTCGGTGAACTGCTTGCTCACTCGGGTTTCGACAAGTCTATTAGTTGCAG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AACAAGACTTCGGTGAACTGCTTGCTCACTCGGGTTTCGACAAGTCTATTAGTTGCAG 869
Score = 220 bits (119), Expect = 2e-56
Identities = 429/569 (75%), Gaps = 60/569 (11%)
Strand=Plus/Plus
Query 289 AATGCAATA-TATGTGGAAAGATTTTTGGGTGTTATCAAGCTTTAGGTGGCCAC-CAAAG 346
||||||| | ||||||| ||||||||||||||||||| || | ||||||||||| | ||
Sbjct 296 AATGCAA-AGTATGTGGCAAGATTTTTGGGTGTTATCGAGGTCTAGGTGGCCACACGAA- 353
Query 347 AGTTCACAGACCGA-TTAGAGGGAAACTAGCGCGTAAAAGGGAGTATACTGAAGATGATA 405
| |||||||| ||| | |||||| || | | || ||| |||| ||||||| |
Sbjct 354 ACTTCACAGATCGACTAAGAGGG-AA-T------T---AGCGAG--TACTCAAGATGAGA 400
Query 406 ATTCATTGTTTGAGTCATCAGATGCTAAGAAGATTGTTTCAAAACCATCAAATTTTGAAG 465
||||| |||| || |||||||| |||||||||||||||||| ||||||||| ||| |||
Sbjct 401 ATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCACAACCATCAAGCTTTAAAG 460
Query 466 TCTCTAAGGTGGAGAAGATCTTAGATTGTGTTGAGTCGAAACAAGGGTTCAGCGAACTGC 525
||||| ||| ||||||| ||||| ||||||| |||| ||||||| ||||| |||| ||
Sbjct 461 TCTCTCAGGAGGAGAAGTTCTTACATTGTGTGGAGTTAAAACAAGACTTCAGTGAACCGC 520
Query 526 -TTC-C--TC--G-G-AATAGTAAGT-CGCTGA-AAAT-ACCTG-AG--AGTAGCTC-CT 570
||| | || | | | || | | | |||| || | | || || | | ||| |
Sbjct 521 TTTCTCATTCGGGTGCATTACCATCTACTCTGAGAAGTAAATTGCAGACAAAAACTCAGT 580
Query 571 -G----CTA--TG--AATGTAAGATATGTGGAAAGAGTTTTGGGTGTTATCAAGGTCTAG 621
| | | || | || || |||||||| |||||||||| ||||| ||||||| |||
Sbjct 581 GGAAATCAAGCTGTCATTGCAAAATATGTGGCAAGAGTTTTGTGTGTTCTCAAGGTTTAG 640
Query 622 GTGGCCACACAAA-ACTTCACAGATCGA-T-----G-AA--AG-G-GCAATTGG-CGCAT 668
|| |||| ||| | |||||||| || | | || || | | || || | |
Sbjct 641 GTAATCACA-AAAGAGTTCACAGAGAGATTAGCGGGAAATTAGCGTGTAAAAGGAAGTAC 699
Query 669 ACTGAGGA-TAATAATTCACTGT-TAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAAC 726
||||| || | ||||| || | | | ||||||| | ||||||||||||||||| | |||
Sbjct 700 ACTGAAGACT-ATAATCCATTCTCT-GACTCATTAAAAGCTAAGAAGATTGTTAAAAAAC 757
Query 727 CATCATGCTTTGAAGTCTCTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAG 786
||||| ||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||
Sbjct 758 CATCAAGCTTTGAAGTCTCTCAGGAGGAGAAGATCTTACATTGTGTTGAGTTAAAACAAG 817
Query 787 ACTTCAGTGAACTGCTTTCTCATTCGGGT 815
||||| ||||||||||| |||| ||||||
Sbjct 818 ACTTCGGTGAACTGCTTGCTCACTCGGGT 846
Score = 167 bits (90), Expect = 3e-40
Identities = 200/250 (80%), Gaps = 19/250 (8%)
Strand=Plus/Plus
Query 287 TAAATGCAATATATGTGGA-AAGATTTTTGGGTGTTATCAAGCT-TTAGGTGGCCACCAA 344
|||||||| ||||||| || |||| ||||| ||||| ||||||| || ||| | |||||
Sbjct 1335 TAAATGCAGTATATGT-GAGAAGAGTTTTGTGTGTTCTCAAGCTCTT-GGTAGTCACCAG 1392
Query 345 AGAGTTCACAGACCGATTAGAGGGAAACTAGCGCGTAAAAGGGAGTATACTGAAGATGAT 404
||| ||||| | || | ||||||||| || |||| ||||| | ||||||||||
Sbjct 1393 AGACTTCAC--A--GA-T----GGAAACTAGTGCCTAAACCTGAGTACATTGAAGATGAT 1443
Query 405 AATTCATTGTTTGAGTCATCAGATGCTAAGAAGATTGTTTCAAAACCATCAAATTTTGAA 464
| |||| |||| || |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1444 AGTTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAAAACCATCAAGCTTTGAA 1503
Query 465 G-T-CTCTAAGGTGGAGAAGATCTTAGATTGTGTTGAGTCGAAACAAGGGTTC-AGCGAA 521
| ||| | || ||||||||||||| | ||||||||| |||||| || |||| | ||||
Sbjct 1504 CATGCTC-A-GGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTAGAGTTCCA-CGAA 1560
Query 522 CTGCTTCCTC 531
| |||| |||
Sbjct 1561 CAGCTTGCTC 1570
Score = 145 bits (78), Expect = 1e-33
Identities = 204/262 (78%), Gaps = 19/262 (7%)
Strand=Plus/Plus
Query 565 GCTCCTGCTATGAATGTAAG-ATATGTGGA-AAGAGTTTTGGGTGTTATCAAGGTCTAGG 622
||||| | ||| |||| || |||||| || |||||||||| ||||| ||||| ||| ||
Sbjct 1325 GCTCCAGTTATAAATG-CAGTATATGT-GAGAAGAGTTTTGTGTGTTCTCAAGCTCTTGG 1382
Query 623 TGGCCACACA-AAACTTCACAGATCGATGAA--AG-GGC--AA-TTGGCGCATACTGAGG 675
| | ||| || | ||||||||||| || || || | | || | | | | | ||| |
Sbjct 1383 TAGTCAC-CAGAGACTTCACAGATGGA--AACTAGTGCCTAAACCT-GAGTACATTGAAG 1438
Query 676 ATAATAATTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAGAACCATCATGCT 735
|| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1439 ATGATAGTTCACTGTTAGACTCATCAGAAGCTAAGAAGATTGTTTCAAAACCATCAAGCT 1498
Query 736 TTGAAG-TCTCTCCGGATGAGAAAAGCTTACATTGTGTTGAGTTAAAACAAGACTTC-AG 793
||||| | ||| ||| ||||| | |||||| ||||||||| |||| ||| ||| |
Sbjct 1499 TTGAACATG-CTCAGGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTAGAGTTCCAC 1557
Query 794 TGAACTGCTTTCTCATTCGGGT 815
|||| |||| |||| ||||||
Sbjct 1558 -GAACAGCTTGCTCACTCGGGT 1578
> AT4G04404.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr4:2166973-2167980 FORWARD LENGTH=693
Length=693
Score = 350 bits (189), Expect = 3e-95
Identities = 356/432 (82%), Gaps = 30/432 (7%)
Strand=Plus/Plus
Query 1 CAATAAAAGAACCATCTTTTATGACTGAGATTGTTGAGGAACATGAGAATGAGATGGATG 60
||||||||||||||| |||||||||||||| ||||||| |||||| || || |||
Sbjct 5 CAATAAAAGAACCATATTTTATGACTGAGA---TTGAGGATCATGAG-AT--GA---ATG 55
Query 61 AAGCTGCAATGAGCTTGGTTATGTTTTCTGAACAAGTTTATGACTTTGATTTGCCTCCTA 120
||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 56 AAGCTGCGATGAGTTTGGTTATGTTTTCTAAACAAGTTTATGACTTTGATTTGACTCATG 115
Query 121 ATGATGATGATGATTCCATGGATTTAGATCAGCTCACACCTA-TACAAGAGAAGAT-CTT 178
| ||||||||||||||||||||||||||||||| | | | | ||| ||| ||
Sbjct 116 GTAATGATGATGATTCCATGGATTTAGATCAGCTTAAAGATTGTGTT-GAGTCGATGCT- 173
Query 179 AGA-TTGTGTTGAG-TGGATACCATCTCACTCGGGTTTCGAAAAGTCTACAACTTGCAGT 236
||| || | || ||| | ||| |||||||| | ||||||||||| |||||||||
Sbjct 174 AGACTTCAGG-GAAATGGTT----TCTAACTCGGGTATGGAAAAGTCTACTACTTGCAGT 228
Query 237 GATGTTGTTGCTGCTCAAGCATTACCTAAATTGCAGAGTAACTCAAGTCGTAAATG-CAA 295
|||||||||||| || | | | | ||||||||||||||| ||||||| || ||| |||
Sbjct 229 GATGTTGTTGCT-CTGA-G-A--AG-TAAATTGCAGAGTAAGTCAAGTCATAGATGTCAA 282
Query 296 TATATGTGGAAAGATTTTTGGGTGTTATCAAGCTTTAGGTGGCCACCAAAGAGTTCACAG 355
|||||||| |||| ||||| ||||||||||||||||||||| |||| |||| |||| ||
Sbjct 283 -ATATGTGGCAAGAGTTTTGAGTGTTATCAAGCTTTAGGTGGTCACCGAAGACTTCATAG 341
Query 356 ACCGATTAGAGGGAAACTAGCGCGTAAAAGGGAGTAT-ACTGAAGATGATAATTCATTGT 414
|||||||| ||||||| |||||||||||||||||||| | | |||||||||||||| |||
Sbjct 342 ACCGATTAAAGGGAAATTAGCGCGTAAAAGGGAGTATTA-TAAAGATGATAATTCACTGT 400
Query 415 TTGAGTCATCAG 426
|||| |||||||
Sbjct 401 TTGATTCATCAG 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5