BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936754
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29350.1 | Symbols: AHP2 | histidine-containing phosphotrans... 800 0.0
AT4G04402.1 | Symbols: | two-component phosphorelay mediator, ... 272 2e-72
> AT3G29350.1 | Symbols: AHP2 | histidine-containing phosphotransmitter
2 | chr3:11264147-11265532 REVERSE LENGTH=827
Length=827
Score = 800 bits (433), Expect = 0.0
Identities = 489/515 (95%), Gaps = 7/515 (1%)
Strand=Plus/Plus
Query 1 ATCTCCGCTTCACTC-TCGTCATGGACGCTCTCATTGCTCAGCTTCAGAGACAATTTCGT 59
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 105 ATCTCCGCTTCACTCTTC-TCATGGACGCTCTCATTGCTCAGCTTCAGAGACAATTTCGT 163
Query 60 GATTACACCATTTCTCTCTACCAACAGGGTTTTTTGGATGATCAATTTACTGAGTTGAAA 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 164 GATTACACCATTTCTCTCTACCAACAGGGGTTTTTGGATGATCAATTTACTGAGTTGAAA 223
Query 120 AAGCTTCAAGATGATGGAAGTCCTGATTTTGTTG-CTGAAGTGCTCACTCTTTTCTTTGA 178
||||| ||||||||||||||||||||||||| || |||||||||| | |||||||||||
Sbjct 224 AAGCTACAAGATGATGGAAGTCCTGATTTTG-TGTCTGAAGTGCTTTCACTTTTCTTTGA 282
Query 179 AGATTGTGTGAAACTTATCAGTAACATGGCTAGAGCTTTGGACAAGACGACGGGAACTGT 238
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 283 AGATTGTGTGAAGCTTATCAGTAACATGGCTAGAGCTTTGGAC---ACGACAGGAACTGT 339
Query 239 AGATTTTAGTCAGGTAGGTGCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 AGATTTTAGTCAGGTAGGTGCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGG 399
Query 299 TGCCAAAAGGGTCAAAGCGTTGTGTGTTAGCTTCAAGGAATATTGTGAAGCTAAGAACTA 358
|||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 400 TGCCAAGAGGGTCAAAACTTTGTGTGTTAGCTTCAAGGAATGTTGTGAAGCTAAGAACTA 459
Query 359 CGAAGGGTGTGTGAGATGTCTGCAGCAAGTAGATATCGAGTACAAGGCGCTAAAGACAAA 418
||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||
Sbjct 460 CGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGGCGTTAAAGACAAA 519
Query 419 GCTTCAAGATATGTTCAATCTTGAGAAACAAATCATTCAAGCTGGAGGTAGAGTTCCTCA 478
|||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 520 GCTTCAAGATATGTTCAATCTTGAGAAACAGATCATTCAAGCTGGTGGTATAGTTCCTCA 579
Query 479 AGTGGATATTAACTAAAGAGACTAGTCCAGAAGAA 513
||||||||||||||||||||||||||||| |||||
Sbjct 580 AGTGGATATTAACTAAAGAGACTAGTCCATAAGAA 614
> AT4G04402.1 | Symbols: | two-component phosphorelay mediator,
putative | chr4:2164007-2165404 FORWARD LENGTH=504
Length=504
Score = 272 bits (147), Expect = 2e-72
Identities = 241/285 (85%), Gaps = 12/285 (4%)
Strand=Plus/Plus
Query 86 GGGTTTTTTGGATGATCAATTTACTGAGTTGAAAAAGCTTCAAGATGATGGAAGTCCTGA 145
||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 69 GGGGTTTTTGGATGATCAGTTTACTGAATTGAAGAAGCTTCAAGATGATGGAAGTCCTGA 128
Query 146 TTTTGTTGCTGAAGTGCTCACTCTTTTCTTTGAAGATTGTGTGAAACTTATCAGTAACAT 205
|||||| ||||| || || |||||||||||||||||||||| || ||||||||||||||
Sbjct 129 TTTTGTAGCTGAGGTTCTGTCTCTTTTCTTTGAAGATTGTGTTAAGCTTATCAGTAACAT 188
Query 206 GGCTAGAGCTTTGGACAAGACGACGGGAACTGTAGATTTTAGTCAGGTAGGTGCTAGTGT 265
|||| |||||||||| ||| |||||||||||||||||||| ||||| | | ||| | |
Sbjct 189 GGCTCGAGCTTTGGATAAGTCGACGGGAACTGTAGATTTTGGTCAGAT-GAAGCTC-T-T 245
Query 266 GCATCAATTGAAGGGTAGTAG-C--T-CAAGTGTTGGTGCCAAAAGGGTCAAAGCGTTGT 321
| || ||| | | || | | || |||||||||| || ||||||||||| ||||
Sbjct 246 -C-TC--TTGTACTCTTGTTTTCGATACA-GTGTTGGTGCGAAGAGGGTCAAAGCTTTGT 300
Query 322 GTGTTAGCTTCAAGGAATATTGTGAAGCTAAGAACTACGAAGGGT 366
|||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 301 GTGTTAGCTTCAAGGAATATTGCGAAGCTCAGAATTACGAAGGGT 345
Score = 176 bits (95), Expect = 2e-43
Identities = 116/126 (92%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 370 TGAGATGTCTGCAGCAAGTAGATATCGAGTACAAGGCGC-TAAAGACAAAGCTTCAAGAT 428
|||||||| |||||||||| ||||| ||||| ||| | | | | ||||||||||||||||
Sbjct 380 TGAGATGTTTGCAGCAAGTGGATATTGAGTATAAGAC-CTTGACGACAAAGCTTCAAGAT 438
Query 429 ATGTTCAATCTTGAGAAACAAATCATTCAAGCTGGAGGTAGAGTTCCTCAAGTGGATATT 488
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 439 ATGTTCAATCTTGAGAAACAAATCATTCAAGCTGGTGGTAGAGTTCCTCAAGTGGATATT 498
Query 489 AACTAA 494
||||||
Sbjct 499 AACTAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5