BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936758

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29370.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   363    9e-100


> AT3G29370.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G39240.1); 
Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11278589-11279108 
FORWARD LENGTH=520
Length=520

 Score =  363 bits (196),  Expect = 9e-100
 Identities = 261/293 (89%), Gaps = 2/293 (1%)
 Strand=Plus/Plus

Query  81   GAAGTAGAAGAGCACATGTGTCGTCAAC-TACGCGGGTTTTACGTACGTGCTGCGGAAAT  139
            |||| ||||||||| |||||||||| || |||| | |||||||  |||||||| ||||||
Sbjct  95   GAAGAAGAAGAGCAAATGTGTCGTC-ACGTACGAGAGTTTTACACACGTGCTGTGGAAAT  153

Query  140  GGTAGTAGGGACGGAGGGAAGAAGGTAACGGAGAAGCTCCTAGCGTTAAAGAGCCTTCTT  199
            |||||||| ||||||||||||| ||| | ||||||||| || ||||||||||||||||||
Sbjct  154  GGTAGTAGCGACGGAGGGAAGACGGTGATGGAGAAGCTTCTTGCGTTAAAGAGCCTTCTT  213

Query  200  CCTCCGCCGGCGAATGTCAGCGGTGGAGAGACGGATGAGCTGTTTAAAGAGACGGCGGAT  259
            ||||| |||| ||||||| | |||||||||||||| ||||||||| ||||||||||||| 
Sbjct  214  CCTCCACCGGTGAATGTCGGTGGTGGAGAGACGGAGGAGCTGTTTCAAGAGACGGCGGAG  273

Query  260  TATATAGTCAGGCTAAGAACACAAGTCATGGTGTTGAAGAAACTGATTGAGATTTACGAC  319
            ||||| || | ||| |||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  274  TATATCGTGAAGCTTAGAACACAAGTCGTGGTGTTGAAGAAACTGATTGAGATTTACGAT  333

Query  320  AACACCTCTGATCAGAAGCTAGATGTTGTTTTATAATGTTCATTTATATTTTC  372
            ||| | ||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  334  AACTCTTCTGATCAGAAGAAAGATGTTGTTTTATAATGTTCATTTATATTTTC  386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5