BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936762
Length=244
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77790.1 | Symbols: | Glycosyl hydrolase superfamily protei... 346 6e-95
> AT1G77790.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr1:29250692-29251976 REVERSE LENGTH=1041
Length=1041
Score = 346 bits (187), Expect = 6e-95
Identities = 225/244 (92%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1 ACAATATCGACGCAATCCGTATGTACGAGCCCTTCGCTGACATGCTCGAAGCCCTCCGTG 60
|||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 161 ACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCAGACATGCTCGAAGCGCTTCGTG 220
Query 61 GCTCAGGTCTCTCCGTCGCGTTTGGTCCACGAAACGAAGAAATCCAATCCCTAGCCCAAG 120
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 221 GCTCAGGTCTCTTAGTCGCGTTTGGTCCACGAAACGAAGATATCCAATCCCTAGCTCACG 280
Query 121 ATCCAGCCGCCGCAACAAATTTCGTCGCCACCTGGATCACACCTTACCAAAACGACGTCA 180
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 281 ATCCAGCCGCCGCAACAAATTTCGTCTCCACCTGGATTACACCTTACCAAAACGACGTTG 340
Query 181 CAATCAAATGGATCACAATCGGTAACGAAGTCTTCCCCGGATAAATCGCTCCATTCGTCG 240
|||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||| || |
Sbjct 341 CAATTAAATGGATCACAATTGGTAACGAAGTCTTCCCCGGAGAAATCGCTCAATTTGTTG 400
Query 241 CCGC 244
||||
Sbjct 401 CCGC 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11058904780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5