BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936765

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 2 ...   233    4e-61
  AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid induci...   158    2e-38


> AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 
2 | chr3:8180768-8181800 REVERSE LENGTH=941
Length=941

 Score =  233 bits (126),  Expect = 4e-61
 Identities = 151/163 (93%), Gaps = 1/163 (1%)
 Strand=Plus/Plus

Query  33   GAT-TGGATTTGTACCAACGTACGAGGATAAAGATCGAGATTGGATGTTGGTTGGTGATG  91
            ||| ||||||||||||||| ||||| ||||||||| | || |||||||||||||||||||
Sbjct  495  GATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATG  554

Query  92   TTCCATGGGACATGTTCTCTTCTTCGTGTAAAAGACTCAGAATCATGAAAGGATCCGATG  151
            ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct  555  TTCCATGGGACATGTTCTCTTCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACG  614

Query  152  CTCCTGCTCTAGACTCTTCCTTATGATCTAGAGAAGATGAGAA  194
            |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  615  CTCCTGCTCTAGACTCTTCCTTATGATCCAGAGAAGCTGAGAA  657


> AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid inducible 
| chr4:8361058-8361986 FORWARD LENGTH=837
Length=837

 Score =  158 bits (85),  Expect = 2e-38
 Identities = 113/126 (90%), Gaps = 3/126 (2%)
 Strand=Plus/Plus

Query  33   GAT-TGGATTTGTACCAACGTACGAGGATAAAGATCGAGATTGGATGTTGGTTGGTGATG  91
            ||| |||||||||||| || || || || |||||| |||||||||||||||| |||||||
Sbjct  495  GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG  554

Query  92   TTCCATGGGACATGTTCTCTTCTTCGTGT-AAAAGACTCAGAATCATGAAAGGATCCGAT  150
            |||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||| 
Sbjct  555  TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGATCCGAA  613

Query  151  GCTCCT  156
            ||||||
Sbjct  614  GCTCCT  619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8752435074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5