BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936770
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29390.1 | Symbols: RIK | RS2-interacting KH protein | chr3:... 2409 0.0
> AT3G29390.1 | Symbols: RIK | RS2-interacting KH protein | chr3:11289613-11294774
FORWARD LENGTH=2049
Length=2049
Score = 2409 bits (1304), Expect = 0.0
Identities = 1663/1827 (91%), Gaps = 62/1827 (3%)
Strand=Plus/Plus
Query 3 TCAGAGAACGGCTCTAAGATGACAGAGGACAACGATGAGCCTAGGGTTTCTC-CAAGCAA 61
|||||| ||| || ||||||||||||||||||||||||| |||||||| ||| | ||| |
Sbjct 45 TCAGAGCACGTCTGTAAGATGACAGAGGACAACGATGAGGCTAGGGTTCCTCTC-AGCGA 103
Query 62 CTCGTCTACAACGAACGATACTTCTCGAACGAGGCAAAGGAGAAAGAGAAAGTGGGATCA 121
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 104 CTCGTCTACAACGAACGATGCTTCTCGAACGAGACAAAGGAGAAAGAGAAAGTGGGATAA 163
Query 122 GCCAGCGGAGCAGCTTGTTGCGGCTGGAGTTGCGTTTCCTCAGTTACTTCCTTTAGGCAA 181
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GCCAGCGGAGCAACTTGTTGCGGCTGGAGTTGCGTTTCCTCAGTTACTTCCTTTAGGCAA 223
Query 182 CACTATGAATGTTCCTTCTATGTCACCATTGCTCCCAACGCTTTCTGTGCCTCCACCAGG 241
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||
Sbjct 224 CACTATGAATGTTCCTTCTATGTCACCATTGCTCCAAACGCTTTCGGTGCCTCTAGCAGT 283
Query 242 TCCAAAAGTTAATCAACATAAGATACAGGATGAATTGATCATAGCGCGAGAAATTGTTAT 301
||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||
Sbjct 284 TCCAAAAGTTAATCAACCTAAAATCCAGGATGAGGTGATCATAGCGCGAGAAATTGTTAT 343
Query 302 CAACGATGCTGAGGCTTCTCTTAGGCACAAGCTTACTAAACGCTCAACTCAAGAAGAAAT 361
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 344 CAACGATGCTGAGGCTTCTCTTAGGCACAGGCTTACCAAACGCTCAACTCAAGAAGATAT 403
Query 362 TCAGAGGTCTACTGGCGCTGTGGTGATTACTAGGGGCAAGTATCGTCCTCCAAATGCACC 421
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TCAGAGGTCTACCGGTGCTGTGGTGATTACTAGGGGCAAGTATCGTCCTCCAAATGCACC 463
Query 422 TCTTGATGGTGAAAAGCCATTGTATCTTCACATATCTGCTGCTG-CC-----CAGTTAAA 475
|| |||||||||||||||||| ||||||||||||||||| |||| || ||||||||
Sbjct 464 TCCTGATGGTGAAAAGCCATTATATCTTCACATATCTGCCGCTGCCCAGTTGCAGTTAAA 523
Query 476 CGAGACTACAGAACGTATTTTAGCAGTTGATCGTGCAGCAGCTATGATTGAGGAGATGCT 535
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 524 AGAGACTACAGAACGTATCTTAGCAGTTGATCGTGCAGCAGCTATGATTGAGGAGATGAT 583
Query 536 GAAACAGAAATCAATTTCACAGGTCGGATCAGTTGGGTTACCGACTGTCAAGATGCAGAG 595
|||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||| |||
Sbjct 584 GAAACAGAAATCAATTTCACAGATCGGATCAGTTGGTTTACAGACGGTCAAGATGCTGAG 643
Query 596 CACATGCGTGTATTTGGGTTTCGAAGCTGACCCATCATCTAATGTTGCTGCTCGTATTCG 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CACATGCGTATATTTGGGTTTCGAAGCTGACCCATCATCTAATGTTGCTGCTCGTATTCG 703
Query 656 TGGGCCTAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCAACTGTTGTACT 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 704 TGGGCCTAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCAACTGTTGTATT 763
Query 716 AAGAGGGCGCGGTTCTGGAAGCATTGAGAACCAACATGGAGAAGAAGCACAACTACCGCT 775
||||||||| ||||| |||||| ||||||| ||||||||||| |||||||| ||||||||
Sbjct 764 AAGAGGGCGTGGTTCAGGAAGCCTTGAGAATCAACATGGAGATGAAGCACAGCTACCGCT 823
Query 776 GCATCTATTATTGTCCGGCAGCAACCCAAAGACCATCGACGATGCAAAACGTTTAGCTGA 835
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 824 GCATCTATTATTATCCGGCAGCAACCCAAAGAGCATCGACGATGCAAAACGTTTAGCTGA 883
Query 836 GAATCTTATGGATACGATCAGTGTAGAATTTGGGGCATCAAGGATTTCCTCAAACAAGGT 895
||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 884 GAATCTTATGGATACAATCAGTGTAGAATTTGGGGCTTCAAGGGTTTCCTCAAGCAAGGT 943
Query 896 GTATGGTGCAGTACCACCACCACAGCAACT-ACTTTCTGGAGCTCCAGGTTCTGAAAAGG 954
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||
Sbjct 944 GTATGGTGCAGTACCACCACCACAGCAACTGA-TTTCTGGAGCTCCGGGTTCTGACCAGG 1002
Query 955 AGCAAACGCCAAATTTAACTTCAACATATGGTTTGATGACATCGATACCAATCACAGCAC 1014
|| || | | |||||| | |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1003 AG-AA-C-CAAAATTTGATTTCAACGTATGGTTTGATGACATCGATACCCATCACAGCAC 1059
Query 1015 CACCA-AGCACTGTTAGTCCGTTTCCAGTTACTCCAACTACAAGTCTTTATCCTCAGTTT 1073
||||| | | |||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1060 CACCATA-CGCTGTTAGTTCGTTTCCAGTTACTCCAGCAACAAGTCTTTATCCTCAGTTT 1118
Query 1074 CCAGTAATGCAACCTCTAGGAATATCAAATGGTGGGCACTTCCATCCAAGTCCTGTCAGT 1133
|||||||||||| |||||||||||||||||||||| | | || || | | ||
Sbjct 1119 CCAGTAATGCAATCTCTAGGAATATCAAATGGTGG-C-C--CC-TC---G-C-----AG- 1163
Query 1134 TACTTACAGCCCGTGGCTGGGGGAACTAGCTATAGTGGGTATGCTGGAATATACCCTCAA 1193
| | | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1164 --C---C--C--GTGGCTGGAGGAACTAGCTATAGTGGGTATGCTGGAATATACCCTCAA 1214
Query 1194 GCCACACCACTGCAACAAGTTGCTCAAGTCCTTAAGCAATCTATTTCTCCTGTTATCTCC 1253
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1215 GCCACACCATTGCAACAAGTTGCTCAAGTCCTTAAGCAATCAATTTCTCCTGTTATCTCT 1274
Query 1254 ACTGTGCCCCCTACTATGTTGCCAGCTACATCCTTCTCGACCCCAAGTGATATTTCAAGT 1313
||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| | |||||
Sbjct 1275 ACTGTGCCCCCTACTATGTTGACAGCTACGTCCTTATCGATCCCAAGTGATAATGCAAGT 1334
Query 1314 AAGGAAAAGGAAAGGAACCCACCCCGAAAGCGAAAGTTTCAGGAACTACCAGCTGATTGT 1373
|| |||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1335 AATGAAATGGAAAGGCGTCCACCCCGGAAGCGAAAGTTTCAGGAACTTCCAGCTGATTGT 1394
Query 1374 AAGGTTCCAGCAAAAGCCAAACAGCAATCAGAGTTAGCAATGACAGGTGATGTTACTCCA 1433
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1395 AAGGTTCCAGAAAAAGACAAACAGCAATCGGAGTTAGCAATGACAGGTGATGTTACTCCA 1454
Query 1434 AAGAATATAGTTGAGGAGCCATCAGCAAATAGAGTGCGGTCGCCTCCTTCACCAAGATCT 1493
| | | |||||||||||||||||||| |||||||||||||||
Sbjct 1455 -----T------------C-A---GCAAATAGAGTGCGGTCGCCGCCTTCACCAAGATCT 1493
Query 1494 GTGATGCCTCCTCCTCCACCAAAGACCATCACACCACCGCCTTCTAAGACCGTGTCTCCT 1553
|| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1494 GTAATGCCTCCTCCTCCACCAAAGACCATCGCACCACCGCCTTCTAAGACCATGTCTCCT 1553
Query 1554 CAATCGTCAAGAAGCATGCTTCCTCCACCACCACCTTCTAAGACCATGTCTCCTCTATCG 1613
| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1554 CCATCATCAAAAAGCATGCTTCCTCCACCACCACGTTCTAAGACCATGTCTCCTCTATCA 1613
Query 1614 TCAAAAAGCATGCTTCCTCCACCACCACGATTTACACCGACAACTCAACCTTCAAGATTA 1673
|||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 1614 TCAAAAAGCATGCTTCCTCCACCACCGCGATTTACACTGACAACTCAACGTTCAAGATTA 1673
Query 1674 CAGGACAACCACATCACTGTAAAGAAACCAAGTCCAGTTCCAGATACGTTGATAAAGCTG 1733
|||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1674 CAGGACAACCACATCAGTGTAAAGAAACCAAATCCAGTTCCAGATACGTTAATAAAGCTG 1733
Query 1734 ATGGAATATGGAGACGATGAAGACGATGATGACGATTCTGATGAGACATTGACAA-TCAG 1792
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||
Sbjct 1734 ATGGAATATGGAGACGATGAAGACGATGATGACGATCCTGATGAGCCATTGACAACT-AG 1792
Query 1793 ATCGTGACAATGTTTTAGATTACAGAA 1819
||||||||| ||| |||||||||||||
Sbjct 1793 ATCGTGACAGTGTATTAGATTACAGAA 1819
Score = 102 bits (55), Expect = 1e-20
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 1579 CACCACCACCTTCTAAGACCATGTCTCCTCTATCGTCAAAAAGCATGCTTCCTCCACCAC 1638
||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1525 CACCACCGCCTTCTAAGACCATGTCTCCTCCATCATCAAAAAGCATGCTTCCTCCACCAC 1584
Query 1639 CACG 1642
||||
Sbjct 1585 CACG 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90009577185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5